Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30986
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    41   1e-04
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    41   2e-04
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    37   0.002
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    37   0.002
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.20 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.1  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    28   1.1  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   4.4  

>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%)
 Frame = +1

Query: 13  GFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQR 192
           G VV HGTD+       L   + T  K +V+ GA  P     +DG  NLL AV++AA+ R
Sbjct: 122 GIVVTHGTDSLEETAMFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAASNR 180


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%)
 Frame = +1

Query: 13  GFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQR 192
           G VV HGTD+       L   + T  K +V+ GA  P     +DG  NLL AV++AA+ R
Sbjct: 122 GIVVTHGTDSLEETAIFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAASNR 180


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +1

Query: 13  GFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQR 192
           G V+ HGTD+       L   + T  K +V+ GA  P     +DG  NLL AV +A++ +
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTA-KPIVVVGAMRPSTAIGADGPMNLLNAVAVASSNQ 177


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +1

Query: 13  GFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQR 192
           G V+ HGTD+       L   + T  K +V+ GA  P     +DG  NLL AV +A++ +
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTA-KPIVVVGAMRPSTAIGADGPMNLLNAVAVASSNQ 177


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 378 CIHWELILEDVSTSSDQPLKWSSLPTTEESSGC 280
           C HWE +   ++ ++D+ LK + +   EE   C
Sbjct: 212 CFHWEAVWSSITRNTDERLKMAQVNCDEEKEMC 244


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 132 TSKRW*QQFVMRCADSGHSTHTRSNSVLWSKTL*GN*SKKSSNTRIYAFDTPNF 293
           +SK W +   +    S  S+HT S S L    + G   K +S++ +Y  DT  F
Sbjct: 327 SSKHWYKLSDLPFTPSPRSSHTLSCSGLTLVLIGGKQGKGASDSNVYMLDTSRF 380


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 291 SSGCRMRKYAC--SNFFYSSSPKEFCSKEHCYFWYALSG 181
           SS  R RK +    N    S  + FC KE+CYF +A +G
Sbjct: 487 SSLQRTRKLSVIIENVISGSRFRCFCPKENCYFMFACAG 525


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 342  TSSDQPLKWSSLPTTEESSGCRMRKYACSNFFYSSSPKEFC 220
            +SS  P+    +  T   SG R  +YA  N+  S+S  +FC
Sbjct: 988  SSSSTPVSTVVVIPTAVCSGVRGLQYAVYNYDISASKSKFC 1028


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 678 ISKGRNQLRIPTSKSPVFVNGLPKDG 601
           +SK    +R P  K+P++  G+PK G
Sbjct: 44  VSKPPLVVRDPRLKNPIYARGIPKSG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,452
Number of Sequences: 5004
Number of extensions: 66089
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)