Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30986
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0004 - 7305986-7306052,7306174-7306490                           29   3.4  
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415...    29   4.5  
12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095...    28   6.0  
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026     28   7.9  

>05_03_0004 - 7305986-7306052,7306174-7306490
          Length = 127

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 285 PNFPPLLEAKTTLEVDPKMLIHPPGSVPNECRLHDQLSRKVYILKV 422
           PNF P     TT   +    IHP  S+  +  +   +SRK+Y+ ++
Sbjct: 64  PNFAPTTSTMTTPRTETDSFIHP--SLHFKISISSYVSRKIYVSRL 107


>07_03_1405 +
           26340645-26340921,26341003-26341226,26341315-26341562,
           26341622-26342051,26342630-26343049
          Length = 532

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43  TAYGGSVLSFMLETVGKTVVLTGAQVPIFQP-RSDGNNNLLCAVLIAAT 186
           T  GG++L+F + T+ +   + GA   +F P R DG    +  +L  +T
Sbjct: 425 TVPGGTMLTFPIATMHRDEEVWGADAGVFDPMRFDGGGGAMAKLLSFST 473


>12_02_1177 -
           26708215-26708309,26708355-26708392,26708476-26709563,
           26709826-26709945,26710018-26710098,26710696-26710812,
           26711122-26711904
          Length = 773

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = -3

Query: 342 TSSDQPLKWSSLPTTEESSG-CRMRKYACSNFFYSSSPKEFCSKEHCYFWYALSGRYQHS 166
           T+  +P + +S  T EE    CR   Y  SN         +   ++ + W  L+     +
Sbjct: 468 TNPLEPKEGASTSTEEEEKNMCRHISYTTSNEVKCKIRNAYVLLKN-FHWAGLTFGGHFT 526

Query: 165 A*QIVVTIASRLKYWNLSTSEYNSLSDGFQHERQDR 58
           +   ++     +++ NLS    N L DG   +  DR
Sbjct: 527 SENFLMDTCGNMRFGNLSKGVINKLEDGDIEKDTDR 562


>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
          Length = 453

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 336 KMLIHPPGSVPNECRLHDQL 395
           K  +HP G  P+ CRL D L
Sbjct: 311 KFCLHPAGDTPSACRLFDAL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,799,375
Number of Sequences: 37544
Number of extensions: 450369
Number of successful extensions: 1102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)