Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30986
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   5e-22
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   8e-19
SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)            77   2e-14
SB_20954| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_54862| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)                   29   3.5  
SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)         29   3.5  
SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              28   8.1  

>SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score =  101 bits (242), Expect = 5e-22
 Identities = 46/75 (61%), Positives = 60/75 (80%)
 Frame = +1

Query: 13  GFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQR 192
           GFVV+HGTDT AY  S LSFM+E +GKT+VLTG+QVPI++ R+DG +NLL A++IA    
Sbjct: 116 GFVVIHGTDTMAYTASALSFMMENLGKTIVLTGSQVPIYEQRNDGRDNLLGALMIAGHYI 175

Query: 193 IPEVTVFFGAKLFRG 237
           IPEV ++FG  L+RG
Sbjct: 176 IPEVGLYFGGCLYRG 190


>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 42/76 (55%), Positives = 55/76 (72%)
 Frame = +1

Query: 10  TGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQ 189
           +GFV+LHGTDT  Y  S LSFM E +GK+V+ TG+Q PI +  +DG +NL  A++IA   
Sbjct: 189 SGFVILHGTDTLPYTASALSFMFENLGKSVIFTGSQSPINEHLNDGRDNLFGALMIAGHH 248

Query: 190 RIPEVTVFFGAKLFRG 237
            IPEVTV+F  KL+RG
Sbjct: 249 VIPEVTVYFHGKLYRG 264



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 468 MEGVVLETYGNGNIQSSAKRSTRRSKEXXXXXXXXXXXXQCING 599
           + G+VLETYG+GN   S K   +   E            QC++G
Sbjct: 313 IRGIVLETYGSGNGPDSRKDLLQELMEASKRGVLIVNCTQCLHG 356


>SB_13381| Best HMM Match : Asparaginase (HMM E-Value=6e-09)
          Length = 231

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
 Frame = +1

Query: 13  GFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQR 192
           GFVVLHG+DT +Y  S LSFM E + K ++ TG+Q+PI   R+D   NL+ A+ IA+ Q 
Sbjct: 22  GFVVLHGSDTMSYSASALSFMFENLSKPIIFTGSQLPIGDLRTDAKENLITAIQIASLQE 81

Query: 193 -----IPEVTVFFGAKLFRG 237
                I EV ++F  KL+RG
Sbjct: 82  KGEATIQEVGLYFEYKLYRG 101



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
 Frame = +3

Query: 234 GN*SKKSSNTRIYAFDTPNFPPLLEAKTTLEVDPKMLIHPPGSVPNECRLHDQLSRKVYI 413
           GN + K S     AF +PNFP L E+   L+V+  +L+          +++    + V I
Sbjct: 101 GNRTTKISAEHFNAFSSPNFPELAESGVHLKVNKDVLLKKVAG--KTLKINKNFDQNVVI 158

Query: 414 LKVAPTITPELIRGV--CEGMEGVVLETYGNGN 506
           LKV P I  +++  +    G++G++LETYG+GN
Sbjct: 159 LKVFPGINEKVVDAIINISGLKGIILETYGSGN 191


>SB_20954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 468 MEGVVLETYGNGNIQSSAKRSTRRSKEXXXXXXXXXXXXQCING 599
           M+GVVL+TYG GN  ++        K+            QCI+G
Sbjct: 1   MQGVVLQTYGAGNAPNNRSDLINEIKQATDRGVIIVNCTQCIHG 44


>SB_54862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 261 TRIYAFDTPNFPPLLEAKTTLEVDPKMLIHP-PGSVPNECRLHDQLSRKVY 410
           TR Y F    FPP  E  TT+++DP  L+ P   ++  E  L D++    Y
Sbjct: 48  TRSYEFIA--FPPDSEEGTTVDLDPACLVRPRRNAICQELELQDKVEESRY 96


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +1

Query: 4   VPTGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNN 156
           +P+  ++   ++ TAYGG +  + L + G  +V+   +VP+    +D NNN
Sbjct: 202 IPSDTILNFLSNRTAYGGVLERYWLNSNGIAIVV-DEEVPLLIAINDSNNN 251


>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
          Length = 909

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +1

Query: 43  TAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFG 219
           T  GG V +  L   G    +   Q P   P S GNNNLLC + +   Q I  +   FG
Sbjct: 409 TQCGGVVFNQDLGNFGIRTCMKDQQCPHNIP-STGNNNLLCLLPVEILQTIAGMLDGFG 466


>SB_12367| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.054)
          Length = 414

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
 Frame = +3

Query: 9   DWI----RGSARHRHNCVRWFGPVFHVGNRRKDCCTHW 110
           DW+    +GS  H+H CV W    +      K  C  W
Sbjct: 315 DWVDTPYKGSMLHKHVCVDWVDTPYKGSTVHKHVCVDW 352



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +3

Query: 9   DWI----RGSARHRHNCVRWFGPVFHVGNRRKDCCTHW 110
           DW+    +GS  H H CV W    +      K  C  W
Sbjct: 243 DWVDTPYKGSTVHEHVCVDWVDTPYKGSMLHKHVCVDW 280



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +3

Query: 9   DWI----RGSARHRHNCVRWFGPVFHVGNRRKDCCTHW 110
           DW+    +GS  H H CV W    +      K  C  W
Sbjct: 297 DWVDTPYKGSTVHEHVCVDWVDTPYKGSMLHKHVCVDW 334


>SB_20137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 317 GLRFQQRRKVRGVECVNTRVRTFFTLVPLKSFAPKNTVTSG 195
           G+   +  + RG+   NTR+ T     PL++ A KN  T G
Sbjct: 159 GISVARGHRKRGLGGTNTRILTLRLSGPLRAHAHKNVTTHG 199


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 246  KKSSNTRIYAFDTPNFPPLLEAKTTLEVDPKMLIHPPGSVPNECRLHDQLSRK 404
            K+S N  +   +TP    +   ++  ++ P +L+  P + PNE  L D   R+
Sbjct: 2184 KRSPNGSLTDVETPASAKVNSTRSDDKLIPSVLVQQPNTPPNEDNLIDSAMRE 2236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,799,156
Number of Sequences: 59808
Number of extensions: 513526
Number of successful extensions: 1363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)