Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30986
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co...    30   1.2  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    29   2.2  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    29   3.8  
At5g56630.1 68418.m07070 phosphofructokinase family protein simi...    28   5.0  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   5.0  
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta...    27   8.8  
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta...    27   8.8  
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta...    27   8.8  
At1g67410.1 68414.m07672 exostosin family protein contains Pfam ...    27   8.8  

>At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit; tomato leucine zipper-containing protein,
           Lycopersicon esculentum, PIR:S21495
          Length = 636

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -3

Query: 276 MRKYACSNFFYSSSPKEFCSKEHCYFWYALSGRYQHSA*----QIVVTIASRLKYWNLST 109
           M K A  +FF SSSPK   S    +  +  S   Q+       + V T  S ++ W+ +T
Sbjct: 1   MAKMAKFSFFSSSSPKYHPSSPSSFTSFPASPLNQNFTQAMMEETVETADSVIRKWDPNT 60

Query: 108 SEYNSLSDGFQHERQDRTTVRSCV 37
             +  +   F H R++      CV
Sbjct: 61  PSFTKIVSLFNHSRKEAKEFIRCV 84


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 201 FWYALSGRYQHSA*QIVVTIASRLKYWNLSTSEYNSLSDGFQHE 70
           F++     YQHS  Q  + + +  + W + T     LS+GF  E
Sbjct: 481 FYFQFLTYYQHSNGQTRLRVTTLSRRWVMGTESLQELSNGFDQE 524


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
            protein contains Pfam profile PF00383: Cytidine and
            deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 146  PSLRG*NIGT*APVSTTVFPTVSNMKDRTEPPYAVVSVPCRT 21
            PSL    +G  +P S + +P  + +K R+E    VVS P  T
Sbjct: 888  PSLHQVEVGQTSPRSQSEYPGTTKLKQRSERHEGVVSSPSST 929


>At5g56630.1 68418.m07070 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 485

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 270 YAFDTPNFPPLLEAKTTLEVDPKMLIHPPGSVPNECRLHDQLSRKVYILKVAP 428
           Y  D P +P  L+      V  +  +H   SVP +  +H    R V+  +  P
Sbjct: 29  YLPDLPTYPNPLQDNPAYSVVKQYFVHADDSVPEKVVVHKDGPRGVHFRRAGP 81


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 249 KSSNTRIYAFDTPNFPPLLEA-KTTLEVDPKMLIHPPGSVPNECRLHDQ 392
           KSSN ++   D PN P L      TL + P +    P    + C + DQ
Sbjct: 348 KSSNQKLQEEDLPNLPYLSAVIMETLRLHPPLPFLVPHKAMSTCHIFDQ 396


>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 347

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 100 VLTGAQVPIFQPRSDGNNNLLCAVLIAATQRI 195
           + TG Q+ ++QP  DG N  + ++  + + R+
Sbjct: 277 IRTGHQLQVYQPHGDGENGPVTSIAFSVSGRL 308


>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 315

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 100 VLTGAQVPIFQPRSDGNNNLLCAVLIAATQRI 195
           + TG Q+ ++QP  DG N  + ++  + + R+
Sbjct: 215 IRTGHQLQVYQPHGDGENGPVTSIAFSVSGRL 246


>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 377

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 100 VLTGAQVPIFQPRSDGNNNLLCAVLIAATQRI 195
           + TG Q+ ++QP  DG N  + ++  + + R+
Sbjct: 277 IRTGHQLQVYQPHGDGENGPVTSIAFSVSGRL 308


>At1g67410.1 68414.m07672 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 430

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 336 KMLIHPPGSVPNECRLHDQL 395
           K  +HP G  P+ CRL D +
Sbjct: 301 KFCLHPAGDTPSSCRLFDAI 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,490
Number of Sequences: 28952
Number of extensions: 355494
Number of successful extensions: 979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)