Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30985
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P18459 Cluster: Tyrosine 3-monooxygenase; n=15; Endopte...    33   7.0  
UniRef50_Q11TE6 Cluster: Leucine-rich protein; n=1; Cytophaga hu...    33   9.2  

>UniRef50_P18459 Cluster: Tyrosine 3-monooxygenase; n=15;
           Endopterygota|Rep: Tyrosine 3-monooxygenase - Drosophila
           melanogaster (Fruit fly)
          Length = 579

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 464 LHRPFNVMCNEDEPHTPSLPLLTSIDKLETLTCSTNS 354
           + RPF V  N   PHT  + +L S+DKLETL    N+
Sbjct: 530 MSRPFEVRFN---PHTERVEVLDSVDKLETLVHQMNT 563


>UniRef50_Q11TE6 Cluster: Leucine-rich protein; n=1; Cytophaga
           hutchinsonii ATCC 33406|Rep: Leucine-rich protein -
           Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 565

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -3

Query: 482 NVNRLQLHRPFNVMCNEDEPHTPSLPLLTSIDKLETLTCSTNSLTILQKLNT 327
           +VN+L   +  NV  N+      +LP LT +  L++L CS+N LT L  L+T
Sbjct: 119 SVNQLTNLQTLNVKNNQ----LTNLPSLTGMTALKSLDCSSNKLTALPDLST 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,786,861
Number of Sequences: 1657284
Number of extensions: 12990872
Number of successful extensions: 24931
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24926
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)