Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30985
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0958 + 9532423-9533202                                           31   1.2  
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392...    28   8.5  

>08_01_0958 + 9532423-9533202
          Length = 259

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 413 LGCEVRLHYT*H*KGDAAAAYSHCIGIIV 499
           LGC +RLH   H  GDAAA    C G ++
Sbjct: 16  LGCMLRLHVVEHPTGDAAAVAFQCDGCML 44


>05_01_0479 -
           3920992-3921513,3921643-3921756,3921905-3922482,
           3922709-3923067,3923132-3923205
          Length = 548

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 230 YVINLSRVSYIPIHITMCDHTGEMLHLFLPPL 135
           Y+ N + VSY P+H     H G++  L  P L
Sbjct: 493 YIANSNHVSYFPVHAITKLHEGDVQSLVDPKL 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,423,293
Number of Sequences: 37544
Number of extensions: 357521
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)