Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30985
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    28   5.8  
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
           protein T23F2.2b protein.
          Length = 1538

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -3

Query: 455 PFNVMCNEDEPHTPS---LPLLTSIDKLETLTCSTNSLTILQ 339
           P +++ +  + H+PS   +PL+T  +K +T+ CS  +L  +Q
Sbjct: 355 PLSIIASHPDLHSPSPMMIPLVTGDNKNQTIYCSQEALNHIQ 396


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
           protein T23F2.2a protein.
          Length = 1534

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -3

Query: 455 PFNVMCNEDEPHTPS---LPLLTSIDKLETLTCSTNSLTILQ 339
           P +++ +  + H+PS   +PL+T  +K +T+ CS  +L  +Q
Sbjct: 355 PLSIIASHPDLHSPSPMMIPLVTGDNKNQTIYCSQEALNHIQ 396


>Z73425-5|CAA97787.1|  427|Caenorhabditis elegans Hypothetical
           protein F12F6.9 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 458 RPFNVMCNEDEPHTPSLPLLTSIDKLETLTCSTNSLTILQKLNTTT 321
           +P        EP +PS  ++T   +L T   ST  L +++ +  TT
Sbjct: 285 QPTTSATTTSEPLSPSTTIVTDAPELVTTETSTEDLAVMEDITATT 330


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 267 LIPNIIVYI*NMLCD*LITRQLHT-YPHHNVRSHRGDVTPF 148
           ++P  +++I   LC  +I +     Y  H +RSHR  V P+
Sbjct: 774 MVPVALLFIPQPLCSVIIVKHRRLKYRLHRIRSHRNHVLPW 814


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 698 DCKCRSITTSRFIKREPPIRTVSEC*IHNSLDYL-INFDKNK 576
           DC  R I +SRF  R  P+ TV  C   +  +Y+ ++F+K++
Sbjct: 122 DCNRREIPSSRFASRVIPL-TVVSCPRRHGAEYMSVSFNKDE 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,502
Number of Sequences: 27780
Number of extensions: 337456
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)