Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30984
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 35 0.043
02_02_0077 - 6586638-6587165 34 0.076
03_02_0484 + 8805053-8805538 33 0.13
03_02_0483 - 8804021-8804485 33 0.13
05_03_0545 - 15244647-15245147,15245342-15245635 33 0.18
03_02_0478 + 8775892-8776377 32 0.31
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 32 0.31
01_01_0229 - 1943473-1943922 32 0.41
01_01_0231 + 1951047-1951499 31 0.54
07_01_1127 + 10456895-10457388,10457488-10458112 31 0.94
04_01_0252 - 3329712-3331061 30 1.2
04_01_0106 + 1102880-1105691,1105781-1105806 30 1.2
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 30 1.2
11_03_0150 + 10810322-10810380,10810530-10810593,10810803-108110... 29 2.9
01_01_0227 + 1933247-1933699 29 2.9
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 28 6.6
02_02_0182 - 7547671-7548501,7549236-7549310,7550520-7550744 28 6.6
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 27 8.7
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609... 27 8.7
01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709... 27 8.7
>03_02_0485 - 8808139-8808618
Length = 159
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVP 397
R+ +EK D+ + R +F RR+ LPE E +++ + +GVL+V P++ P
Sbjct: 95 REQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>02_02_0077 - 6586638-6587165
Length = 175
Score = 34.3 bits (75), Expect = 0.076
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 290 QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPIAQTG 442
+F RR+ LPE + V + DGVL+V +K PP + R + + G
Sbjct: 117 KFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPPEPKKPRVVEVKVAG 166
>03_02_0484 + 8805053-8805538
Length = 161
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVP 397
++ +EK D+ + R +F RR+ LPE E +++ + +GVL+V P++ P
Sbjct: 97 KEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVP 397
++ +EK D+ + R +F RR+ LPE E +++ + +GVL+V P++ P
Sbjct: 90 KEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = -3
Query: 366 TPSEDSRDSTDSAVQPSGKA*RRVN*RDM*PC*SFFSCVCLQPRCSRPPF*QRFLPGRNA 187
TPS++ R TDS+ + K N ++ +S CLQPR SRPP ++F GR+
Sbjct: 191 TPSQNDRPQTDSSAK---KTLICYNCKEP----GHYSRDCLQPRQSRPPHYRQFTRGRHP 243
Query: 186 GR 181
R
Sbjct: 244 NR 245
>03_02_0478 + 8775892-8776377
Length = 161
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 391
++ +EK DQ + R +F RR+ LP+ E +++ + +GVL+V P++
Sbjct: 97 KEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
++ ++K D+ + R QF RR+ LPE + V++ L +GVL+V P+
Sbjct: 86 KEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
++ ++K D+ + R QF RR+ LPE + V++ + +GVL+V P+
Sbjct: 85 KEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
++ ++K D+ + R QF RR+ LPE + V++ + +GVL+V P+
Sbjct: 86 KEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 30.7 bits (66), Expect = 0.94
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = -3
Query: 366 TPSEDSRDSTDSAVQPSGKA*RRVN*RDM*PC*SFFSCVCLQPRCSRPPF*QRFLPGRNA 187
TPS++ R TDS+ + K N ++ +S CLQPR SRPP ++F R+
Sbjct: 299 TPSQNDRPQTDSSAK---KTLICYNCKEP----GHYSRDCLQPRQSRPPHYRQFTRSRHP 351
Query: 186 GR 181
R
Sbjct: 352 NR 353
>04_01_0252 - 3329712-3331061
Length = 449
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = -3
Query: 366 TPSEDSRDSTDSAVQPSGKA*RRVN*RDM*PC*SFFSCVCLQPRCSRPPF*QRFLPGRNA 187
TPS++ R TDS+ + K N ++ +S CLQPR +RPP ++F R++
Sbjct: 376 TPSQNDRPQTDSSAK---KTLICYNCKEP----GHYSRDCLQPRQNRPPHYRQFTRSRHS 428
Query: 186 GR 181
R
Sbjct: 429 NR 430
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 102 WRHLAAAARDLGSSIKSDKD-KFQVNLDVQHFAPEEISVKTADGYIVVEGKHRRRKISMV 278
W+ LAA ++ + +++ ++ K Q N+D+ +P I + + + + KH + +
Sbjct: 119 WQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNKIVGFA 178
Query: 279 TYR--VNSLVATLCRRAVRLNLWSPG 350
R + L+ T + +++W G
Sbjct: 179 NERDCLQELLMTNEKSCSIISIWGMG 204
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 99 PWRHLAAAARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHRRRK 266
P R LA + + D + ++ D+ + EE+ V D +V+ G+H++ +
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEE 177
>11_03_0150 +
10810322-10810380,10810530-10810593,10810803-10811047,
10811627-10811747,10811821-10811895,10811986-10812112,
10812194-10812939,10813065-10813195,10813547-10813636,
10814000-10814105
Length = 587
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +2
Query: 245 RQTQEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKI 424
R T+ + D + ++ R LP+ SV S+ S A +K+P K
Sbjct: 265 RHTEGRVDSNRKVAGANRERVVLPDNGRMHSVVRNGSTQATTSKAASQKLP------SKA 318
Query: 425 PIAQTGPVRKEVKDQS 472
PIA P+ K V DQS
Sbjct: 319 PIANRPPI-KSVSDQS 333
>01_01_0227 + 1933247-1933699
Length = 150
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 284 SRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 391
S +F RR+ LP G + V + + +GVL+V P++
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +3
Query: 6 RLMDQHFGLGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLG--SSIKSDKDKFQVNL 179
+ ++ HF + LT + + + R W+ + DL S+ SD D F ++L
Sbjct: 407 KALNDHFNINLTSDQITN----------HIRTWKRKYSKIADLRKLSAALSDDDNFIISL 456
Query: 180 DVQHFAPEEISVKTADGYIVVEGKHRRRKISMV 278
D +H+A + I AD + + H K+ ++
Sbjct: 457 DHKHYA-DHIKDHKADAEYLNKPIHNYSKMLVI 488
>02_02_0182 - 7547671-7548501,7549236-7549310,7550520-7550744
Length = 376
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Frame = +1
Query: 217 KRRTATSWLKANTGEERSAWLHIASIHSSLRFAGGLYG*ICGVPAVFRWCVVC----NRT 384
+R+ A + A G + +AWL I SS + Y + P F +R
Sbjct: 252 RRKVAAAAAAAGGGNDAAAWLAGFQI-SSAGPSSPTYSLVAPPPNPFGAAAAAAGSSSRV 310
Query: 385 QEGAAS--SGG*TQDSDRPNRTRAQGGEG 465
GA S +GG Q +D R A GGEG
Sbjct: 311 MSGACSPVAGGDVQMADAARREFAFGGEG 339
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = -1
Query: 464 PSPPCARVRFGRSESCVH---PPLLAAPSWVRLQTTHHLKTAGTPQIQPYSPPAKRSDE* 294
PSPPCA V S + ++ PP AP V L++ + + P++P + D
Sbjct: 128 PSPPCALVEVDISSNALNGTLPPSFLAPCGV-LRSVNLSRNGLAGGGFPFAPSLRSLDLS 186
Query: 293 IDAICNHADLSSPVFAFNHDVAVRRFNRDFFRGEM 189
+ + + A L + FA H V + + F G +
Sbjct: 187 RNRLAD-AGLLNYSFAGCHGVGYLNLSANLFAGRL 220
>07_03_0275 -
16160467-16160555,16160695-16160764,16160860-16160940,
16161160-16161252,16161430-16161510,16161605-16161694,
16161812-16161905,16162063-16162131,16162205-16162275,
16162545-16162628,16162755-16162847,16162995-16163102,
16163297-16163447,16164026-16164297,16165213-16165218,
16165389-16165613
Length = 558
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 15 DQHFGLGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLGSSIKSDKDKFQVNLDVQHF 194
D LG+T D +S A + +R + P R A A +DLG + + F D+
Sbjct: 29 DTEEDLGVTDADEVSRAPRAMPTRIWVSPTRLPAVADKDLGVADADELKVFLRCTDLMAV 88
Query: 195 APEEISVKTA-DGYIVVEGKHRRRK 266
A + A DG G+ RRR+
Sbjct: 89 ASRLAVARVAPDG--GAAGRRRRRR 111
>01_01_0900 +
7091970-7092068,7092175-7093131,7093210-7093968,
7094322-7094366
Length = 619
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 321 AVRLNLWSPGCLQMVCCL*SHPGRCRQQWRVNARFRSPKPDP 446
AVR NL + L C GR + WRV AR R+ DP
Sbjct: 220 AVRPNLTTYNILVKAWC---DAGRLEEAWRVVARMRASGADP 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,791,873
Number of Sequences: 37544
Number of extensions: 454776
Number of successful extensions: 1471
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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