Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30984
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 50 2e-06
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 43 2e-04
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 37 0.015
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 37 0.015
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 37 0.015
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 35 0.044
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 34 0.10
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 31 0.72
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 1.3
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015) 28 6.7
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043) 28 6.7
SB_75| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_54295| Best HMM Match : RVP (HMM E-Value=0.037) 28 6.7
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14) 27 8.9
SB_22731| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +2
Query: 254 QEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIP 427
Q + + G+ S++F R Y LPEG S+ +R++ DG+L V A +K PPA E K P
Sbjct: 36 QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDGMLHVEALKKSPPATT-ENKAP 92
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 153 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHR 257
D DKFQ+ LDV+ F PEEI+ K +G I V G R
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQR 37
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 248 QTQEKKDQHGYIS-RQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 391
+ +++ ++HG+ + RQF R + LP +++ RL DGVL + A ++
Sbjct: 126 RARQECEEHGFFTARQFNRHFVLPREVDMDTLVPRLGKDGVLYIEADKR 174
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 153 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHRRRKISMVTYR 287
D KF + LDV F PEE+ VK + V + + T R
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTAR 140
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 257 EKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVE 409
+ + +HGY + +F R Y LP+G +V SR++ DG+L + A + P E
Sbjct: 71 KSEGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAEPQETE 121
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +3
Query: 132 LGSSIKSDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHR 257
L ++ + + DK ++ LDV+++ PEEIS+K G I ++GKH+
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHK 71
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 299 RRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 430
R + LP+ +S+ SRL DG L + A R + P ER++ I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPH-ERQVNI 203
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKH 254
++++K ++ LDV+ + PEEIS K +G++ V+G+H
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 DKFQV-NLDVQHFAPEEISVKTADGYIVVEGKH 254
D+ ++ LDV+ + PEEIS K +G++ V+G+H
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH 271
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 129 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
D G DKF + +DV F P+ I V+ ++V H
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH 128
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 129 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
D G DKF + +DV F P+ I V+ ++V H
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH 362
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKH 254
++++K ++ LDV+ + PEEIS K +G++ V+G+H
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 129 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
D G DKF + +DV F P+ I V+ ++V H
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH 128
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKH 254
++++K ++ LDV+ + PEEIS K +G++ V+G+H
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 129 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
D G DKF + +DV F P+ I V+ ++V H
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH 128
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKH 254
++++K ++ LDV+ + PEEIS K +G++ V+G+H
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH 37
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 129 DLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
D G DKF + +DV F P+ I V+ ++V H
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH 128
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKH 254
++++K ++ LDV+ + PEEIS K +G + V+G+H
Sbjct: 3 NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH 38
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 135 GSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
G+ +S DKF + +DV+ F PE I V+ ++V H
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANH 128
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 177 LDVQHFAPEEISVKTADGYIVVEGKH 254
LDV+ + PEEIS K +G + V+G+H
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH 37
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 147 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKH 254
K+ +DKF + +DV F PE I V+ ++V H
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANH 127
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 120 AARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHRRRKISMVTYR 287
A ++ S+ D KF + LDV F PEE+ VK + V + + T R
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTAR 68
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 479 RRWIGPSPPCARVRFGRSESCVHPPL--LAAPSWVRLQTTHHLKTAG 345
+ W P P V FG + C+H P+ L A W+ QTT KT G
Sbjct: 134 KSWSQPFP----VNFGVRQGCIHSPILFLVAIDWIMRQTTSD-KTRG 175
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 380 APRKVPPAVEGERKIPIAQTGP 445
+PR V P V ER+I ++Q+GP
Sbjct: 1384 SPRSVKPVVRSERRIKLSQSGP 1405
>SB_47661| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
Length = 830
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 147 KSDKDKFQVNLDVQHFAPEEISVKTADGYI-----VVEGKHRRRKISMVTYRVNSLVATL 311
+ D +KF+ + D+Q + + A+G I +V + +RKI + +++ L T
Sbjct: 702 RCDWEKFRRDKDIQPYYQVRQELSVAEGLIFREERIVLPEVLQRKIVKIGHKMGHLGKTK 761
Query: 312 CRRAVRLNLWSPGCLQMV 365
++ +R W P M+
Sbjct: 762 TKQMLREKYWFPNMNSMI 779
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 146 DAGAKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQ 30
D A V + S V+ FS H G+ CST + ++P+
Sbjct: 154 DVLAAVKTPVSPVSSNGTAFSEHGGSPCSTPTVSSAEPR 192
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 147 KSDKDKFQVNLDVQHFAPEEISVKTADGYI-----VVEGKHRRRKISMVTYRVNSLVATL 311
+ D +KF+ + D+Q + + A+G I +V + +RKI + +++ L T
Sbjct: 908 RCDWEKFRRDKDIQPYYQVRQELSVAEGLIFREERIVLPEVLQRKIVKIGHKLGHLGKTK 967
Query: 312 CRRAVRLNLWSPGCLQMV 365
++ +R W P M+
Sbjct: 968 TKQMLREKYWFPNMNSMI 985
>SB_18926| Best HMM Match : Colipase_C (HMM E-Value=0.0043)
Length = 811
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 320 GCTAESVESRLSSDGVLSVIAPRKVPPA 403
G + +S+ES++ SDG ++P K PA
Sbjct: 531 GSSPQSLESQVLSDGCTKTMSPNKTSPA 558
>SB_75| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 437 FGRSESCVHPPLLAAPSWVRLQTTHHLKTAGT 342
F R+ V+PP LA P W+ + H T GT
Sbjct: 31 FTRTIGKVYPPTLANPDWIHYE-EHFKTTTGT 61
>SB_54295| Best HMM Match : RVP (HMM E-Value=0.037)
Length = 239
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 392 VPPAVEGERKIPIAQTGPVRKEVKD-QSNG 478
V P + RK+PI+ GPV++++ + + NG
Sbjct: 156 VTPVIHPPRKLPISPLGPVKEKLSEMEQNG 185
>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1787
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 147 KSDKDKFQVNLDVQHFAPEEISVKTADGYI-----VVEGKHRRRKISMVTYRVNSLVATL 311
+ D +KF+ + D+Q + + A+G I +V + +RKI + +++ L T
Sbjct: 1009 RCDWEKFRRDKDIQPYYQVRQELSVAEGLIFREERIVLPEVLQRKIVKIGHKLGHLGKTK 1068
Query: 312 CRRAVRLNLWSPGCLQMV 365
++ +R W P M+
Sbjct: 1069 TKQMLREKYWFPNMNSMI 1086
>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 92 LPPVASPCCRGSRPWLQHQK 151
L P SPCC+ + W+Q+ K
Sbjct: 296 LKPTMSPCCKTTTTWVQNLK 315
>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 248 QTQEKKDQHGYISRQFTRRYALPEGCTAESVESRLSS-DGVLSVIAPRKVPPAVEGERKI 424
+T KK+ GY + ALP GCT ES S+ + S AP + P+ + +
Sbjct: 180 RTPPKKNP-GYCPMYSLFKAALPAGCTGESTPSQQAPYQSTPSQRAPYQSTPSQQAPYQS 238
Query: 425 PIAQTGPVRKEVKDQS 472
+Q P + Q+
Sbjct: 239 TPSQQAPYQSTPSQQA 254
>SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)
Length = 682
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 147 KSDKDKFQVNLDVQHFAPEEISVKTADGYI-----VVEGKHRRRKISMVTYRVNSLVATL 311
+ D +KF+ + D+Q + + A+G I +V + +RKI + +++ L T
Sbjct: 594 RCDWEKFRRDKDIQPYYHVRQELSVAEGLIFREERIVLPEVLQRKIVKIGHKLGHLGKTK 653
Query: 312 CRRAVRLNLWSPGCLQMV 365
++ +R W P M+
Sbjct: 654 TKQMLREKYWFPNMNSMI 671
>SB_22731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 383 VRLQTTHHLKTAGTPQIQPYSP 318
VR +T HH K P I+PY P
Sbjct: 29 VRERTGHHKKCGALPSIKPYLP 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,234,290
Number of Sequences: 59808
Number of extensions: 466537
Number of successful extensions: 1346
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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