Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30984
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 324  VRLNLWSPGCLQMVCCL*SHPGRCRQQW 407
            + LN WS G   M+  +  H  + +Q+W
Sbjct: 1479 LHLNAWSDGGCPMIYFVVEHKKKNQQEW 1506


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 427 RNLAFTLHCWRHLPGCDYRQ 368
           R+  + L  W+ LP C Y+Q
Sbjct: 251 RDAFYGLPLWKLLPTCAYKQ 270


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 323 SPPAKRSDE*IDAICN 276
           +PP   ++E +DA+CN
Sbjct: 453 APPQLPTEESVDALCN 468


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 310 SVATSELTRYVTMLIFLLLCL 248
           SV +  LT   + LIF +LC+
Sbjct: 18  SVLSLSLTSLASSLIFTILCI 38


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 310 SVATSELTRYVTMLIFLLLCL 248
           SV +  LT   + LIF +LC+
Sbjct: 18  SVLSLSLTSLASSLIFTILCI 38


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 310 SVATSELTRYVTMLIFLLLCL 248
           SV +  LT   + LIF +LC+
Sbjct: 18  SVLSLSLTSLASSLIFTILCI 38


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 310 SVATSELTRYVTMLIFLLLCL 248
           SV +  LT   + LIF +LC+
Sbjct: 18  SVLSLSLTSLASSLIFTILCI 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,986
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)