Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30984
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H...    37   0.009
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    37   0.012
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    34   0.064
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    33   0.19 
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    32   0.34 
At5g12030.1 68418.m01406 17.7 kDa class II heat shock protein 17...    31   0.45 
At5g04290.1 68418.m00422 KOW domain-containing transcription fac...    31   0.45 
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    31   0.78 
At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family pr...    29   1.8  
At3g49540.1 68416.m05414 expressed protein                             28   4.2  
At5g10300.1 68418.m01195 hydrolase, alpha/beta fold family prote...    27   7.3  
At2g01960.1 68415.m00131 expressed protein                             27   9.6  
At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    27   9.6  
At1g34180.1 68414.m04239 no apical meristem (NAM) family protein...    27   9.6  

>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
           (HSP22.0-ER) identical to endomembrane-localized small
           heat shock protein GI:511795 from [Arabidopsis thaliana]
          Length = 195

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +2

Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGE 415
           R+ ++K DQ   + R   +F R++ LP+    ESV+++L  +GVL++   +  P  V+G 
Sbjct: 114 REEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKL-ENGVLTINLTKLSPEKVKGP 172

Query: 416 RKIPIA 433
           R + IA
Sbjct: 173 RVVNIA 178


>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 248 QTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGER 418
           + +EK D+   + R   +FTRR+ LPE    E +++ +  +GVLSV  P KVP      +
Sbjct: 94  ENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVP-KVPEKKPEVK 151

Query: 419 KIPIA 433
            I I+
Sbjct: 152 SIDIS 156


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +2

Query: 245 RQTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
           ++ +EK D+   + R   +F RR+ LPE    E V++ +  +GVL+V+ P+
Sbjct: 95  KENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVPK 144


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 248 QTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
           + +EK D    + R   +F RR+ LPE    E V++ +  +GVLSV  P+
Sbjct: 93  ENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVPK 141


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 284 SRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
           S QFTRR+ LPE    + V++ +  +GVL+V  P+
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVPK 138


>At5g12030.1 68418.m01406 17.7 kDa class II heat shock protein 17.6A
           (HSP17.7-CII) identical to heat shock protein 17.6A
           GI:3256075 from [Arabidopsis thaliana]
          Length = 156

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 290 QFTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPI 430
           +F R++ LP+    E + S   +DGVL V  P+  PP  +  + I +
Sbjct: 108 KFMRKFQLPDNADLEKI-SAACNDGVLKVTIPKLPPPEPKKPKTIQV 153


>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
            family protein
          Length = 1493

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 122  GSRPWLQHQK*QG*VPSKPGRPAFRPGRNLC*NGGRLHRG*RQTQEKKD 268
            GS+PW +H         + G   FR GRN    GGR   G R +  K D
Sbjct: 1321 GSKPWNEHSGGGRGFGERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKTD 1369


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +2

Query: 248 QTQEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
           + +EK+D    + R   QF+R++ LPE    + V++ +  +GVL+V  P+
Sbjct: 92  EKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASM-ENGVLTVTVPK 140


>At1g65520.1 68414.m07434 enoyl-CoA hydratase/isomerase family
           protein low similarity to enoyl-CoA hydratase
           [Escherichia coli] GI:2764828, carnitine racemase
           SP|P31551 [Escherichia coli]; contains Pfam profile
           PF00378 enoyl-CoA hydratase/isomerase family protein
          Length = 240

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = -1

Query: 293 IDAICNHADLSSPVFAFNHDVAVRRFNRDFFRGEMLDVQVYLELILVTFDAGAKVSSRGS 114
           I A+  HA  +  + A +HD  + R +R F     LD+    ELI+  +         GS
Sbjct: 96  IAAVTGHASAAGCILAMSHDYVLMRRDRGFLYMSELDI----ELIVPAWFMAVIRGKIGS 151

Query: 113 KVTPRAVVFSAHK 75
               R V+ +A K
Sbjct: 152 PAARRDVMLTAAK 164


>At3g49540.1 68416.m05414 expressed protein 
          Length = 166

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 317 EGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIPIAQTGPVRKEVK 463
           E    E+ E+++ +   ++V AP KV  AVE E+K   A+  PV+ E +
Sbjct: 100 ENAATENAEAKVEA---VAVAAPEKVEVAVEAEKK---AEAEPVKAEAE 142


>At5g10300.1 68418.m01195 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, alpha-hydroxynitrile lyase [Manihot
           esculenta] GI:2780225; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 258

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = -2

Query: 334 FSRTALRQSVATSELTRYVTMLIFLLLCLPSTTM*PSAVL---TEISSG-AKC-WTSRFT 170
           FS   +  ++A       + +L+FL   LP TT  PS VL    E+  G   C ++S  T
Sbjct: 80  FSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHET 139

Query: 169 WNLSLSLLMLEP 134
            N ++SLL + P
Sbjct: 140 RNGTMSLLKMGP 151


>At2g01960.1 68415.m00131 expressed protein
          Length = 260

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 47  RFSQCCSRPPCEQRILPPVASPCC 118
           RF    + PP ++R+LP V + CC
Sbjct: 147 RFVNSYALPPYDRRLLPSVKTGCC 170


>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +3

Query: 120 AARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHRRRKISMVTYRVNSL 299
           AAR +  ++     KF    D+  F P++ ++KT   +      +R  K S+  + VN+ 
Sbjct: 533 AARKIFHNVAKPGSKFIYANDIMRFLPDDEALKTLSLFEGASETNRISKSSLKNWVVNAF 592

Query: 300 VATLCRRAVRLNL 338
                RRA+ L L
Sbjct: 593 RE---RRALALTL 602


>At1g34180.1 68414.m04239 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM-like protein GI:8809651 from (Arabidopsis
           thaliana)
          Length = 564

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 257 EKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 388
           E  D  G   RQF     +P+G +AE ++S L ++     I PR
Sbjct: 235 EIPDAPGVNQRQFDEFVGVPQGNSAEVIQSTLLNNSSGEYIDPR 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,354
Number of Sequences: 28952
Number of extensions: 308239
Number of successful extensions: 852
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)