Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30982
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   2.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   6.1  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    25   8.1  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 228 KARFTSKDSEIY*SLGEDGAMLVVSFSHGMFRFLRVASYISCVVIFYSAFFF 73
           K+ F S  S +  SL    A+L+V      FRF R  S +  V+ ++S F F
Sbjct: 465 KSLFISVVSTLNFSLSFVVAILLVPLQFISFRFNRRLSLLFAVLTYFSTFIF 516


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 28  CFE*HMSYKRFYFIFEKE 81
           CFE H++YK ++  FE E
Sbjct: 281 CFESHLNYKAWHLEFENE 298


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 596 IKNLFTNKKGPFTLW-IEMLVFRSAVAMAIME 688
           I NLF   K PFT W I   V ++ V +  ME
Sbjct: 86  ILNLFKKHKVPFTCWAIGQAVEKNPVVVGAME 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,147
Number of Sequences: 5004
Number of extensions: 45172
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)