Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30981
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   3.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   3.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.4  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.8  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 322 VGYPDTE-NCSQVLLPPSVQSTLAAP 248
           + YP ++ NC Q   PP + S L  P
Sbjct: 45  ITYPPSDWNCPQYNAPPYMSSVLQLP 70


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 535 CFQELSFQVDSFSKNPTTTTSSLEVKASKSA 443
           C Q+L  Q +  +    TTTS  +VKASK++
Sbjct: 182 CRQQLQQQQNKSASR--TTTSPTKVKASKAS 210


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 322 VGYPDTE-NCSQVLLPPSVQSTLAAP 248
           + YP ++ NC Q   PP + S L  P
Sbjct: 36  ITYPPSDWNCPQYNAPPYMSSVLQLP 61


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
 Frame = -3

Query: 308 HRELFTSTLATFRTVYFSSATGG-------SSVFKRPAATAYSGFSLLQ*PHQGA 165
           H++LF S        Y SS+  G       SS    PAA  Y   S     HQ A
Sbjct: 20  HQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAA 74


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
 Frame = -3

Query: 308 HRELFTSTLATFRTVYFSSATGG-------SSVFKRPAATAYSGFSLLQ*PHQGA 165
           H++LF S        Y SS+  G       SS    PAA  Y   S     HQ A
Sbjct: 20  HQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQAA 74


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 280  PPSVQSTLAAPPEGH 236
            PPSV S+   PP  H
Sbjct: 1796 PPSVHSSTVVPPPQH 1810


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 94  HPPRPLYINKLCPIKEQTLV 35
           H  +P   + LC IKE+T++
Sbjct: 68  HRMKPALFSVLCEIKEKTVL 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,582
Number of Sequences: 336
Number of extensions: 3823
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)