Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30980
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 78 1e-15
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 37 0.003
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 35 0.014
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.024
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 33 0.042
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 32 0.073
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 32 0.073
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 32 0.073
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.13
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 31 0.13
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 31 0.22
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.29
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 30 0.29
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 30 0.39
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 29 0.68
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 28 1.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 28 1.2
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 1.6
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 28 1.6
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 2.1
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 2.1
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 2.7
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 27 2.7
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 27 3.6
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 6.3
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 6.3
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 6.3
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 8.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.3
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 8.3
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 8.3
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 8.3
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 77.8 bits (183), Expect = 1e-15
Identities = 47/148 (31%), Positives = 73/148 (49%)
Frame = +1
Query: 64 ALEAQLQVRFITKQEQYAVPDSPYAIQCNVTPCGP*YLNQRNFEGDLTIVREGGNI*FLS 243
A Q+QVRF T+ E AV D+P + ++ G L+Q L + FL
Sbjct: 6 APSGQVQVRFTTRNEDLAVGDTPIFVPTSLKRYG---LSQ--IVNHLLKTEKPTPFDFLV 60
Query: 244 MWRVLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSSWILSG 423
++L +L E++ + G+STE L++EY++ P HDDW+S +Q S IL+
Sbjct: 61 QGQLLKTTLDEYIVQNGLSTESILDIEYIQSTLPPAYLASFSHDDWISGIQLTSDTILTS 120
Query: 424 SYDNSLHIWSTKGQHKLAIPGHTSPVKA 507
SYD +W G+ K G S +K+
Sbjct: 121 SYDGIARVWDKSGEIKFQSTGCGSSLKS 148
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKADHGFPSRAIKLHLL 549
H D V + S+ ++SGS D ++ +W G ++ + GHT PV + R + L
Sbjct: 352 HTDSVLCLTFDSTLLVSGSADCTVKLWHFSGGKRITLRGHTGPVNSVRIIRDRGLVLSGS 411
Query: 550 VDLMIK 567
D IK
Sbjct: 412 DDSTIK 417
Score = 31.1 bits (67), Expect = 0.17
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLA-IPGHTSPV 501
H D V +Q + + SGSYD ++ +W+ ++A + GH+S V
Sbjct: 272 HSDGVMCLQLVRNILASGSYDATIRLWNLATFQQVALLEGHSSGV 316
Score = 30.7 bits (66), Expect = 0.22
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 253 VLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSSWILSGSYD 432
V+C L ++ G S + T+ + L F + H V+ +Q ++SGS D
Sbjct: 276 VMCLQLVRNILASG-SYDATIRLWNLATFQQVALLEG--HSSGVTCLQFDQCKLISGSMD 332
Query: 433 NSLHIWSTKGQHKLAI-PGHTSPV 501
++ IW+ + ++I GHT V
Sbjct: 333 KTIRIWNYRTSECISILHGHTDSV 356
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 525 QGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
Q DQ +SGS D+T + +WN R S +C+ GH +
Sbjct: 320 QFDQCKLISGSMDKT--IRIWNY-RTS-ECISILHGHTDSV 356
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 HDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQH-KLAIPGHTSPV 501
H D++ +V WI+SGS D ++ WS H +L + GH + V
Sbjct: 511 HKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSV 557
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 355 QDCLMH-DDWVSAVQ--AHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPV 501
Q ++H DD V+ V +I +GS D + IW++ G + GH V
Sbjct: 410 QKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESV 461
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 516 VSFQGDQATFVSGSHDQTAILW 581
+ F D T VSGS D+T LW
Sbjct: 382 LDFSKDGKTLVSGSGDRTVCLW 403
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.024
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 HDDWVS--AVQAHSSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
H D+V AV S W LSGS D S+ W + GQ L GH + V
Sbjct: 537 HTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSV 583
Score = 29.5 bits (63), Expect = 0.51
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKADHGFPSRAIKLHLLVDLMIK 567
A+ + +I GS D + +WS G + GH V + P +I L +D IK
Sbjct: 450 AISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKTIK 509
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 33.1 bits (72), Expect = 0.042
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKADHGFPSRAIKLHL 546
H D V + + ++SGSYD+S+ IW + G+ + GH+ + + P R I +
Sbjct: 506 HTDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISG 565
Query: 547 LVDLMIK 567
+D I+
Sbjct: 566 SMDKSIR 572
Score = 31.9 bits (69), Expect = 0.096
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKA-DHGFPSRAIK 537
H + V AV+ H + ++SGS D ++ +W+ K + GH S ++ + PSR I+
Sbjct: 390 HKEGVWAVKIHENTLVSGSIDKTVRVWNIEKAKCTHIFRGHISIIRCLEILVPSRLIR 447
Score = 28.7 bits (61), Expect = 0.89
Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKA 507
HD +V+ + + ++SGS D+++ IW G+ + +P ++ + +
Sbjct: 588 HDAFVTLLNVFQNRLISGSADSTIRIWDLNTGKPLMVLPSNSGYISS 634
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 415 LSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKADHGFPSRAI 534
+SGS D S+ +W + G K + GH + V + F +R I
Sbjct: 563 ISGSMDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLI 603
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 540 TFVSGSHDQTAILWVWNVPRNSVDCMITYRGH 635
T VSGS D+T + VWN+ + C +RGH
Sbjct: 403 TLVSGSIDKT--VRVWNIEK--AKCTHIFRGH 430
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 382 VSAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
V V+ +I+SGS D++L +W K +P +T+ +
Sbjct: 450 VEIVEPDQPYIVSGSRDHTLRVWKLPKNTDPPYLPDNTNSI 490
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 32.3 bits (70), Expect = 0.073
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 400 HSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKADHGFPSRAIKLHLLVDLMI 564
+S ++ +GS D ++++WS G + +PGH V P + I L D I
Sbjct: 280 NSRFVGAGSSDKNVYVWSATGDLRYVLPGHEGSVNHVDFHPHQDIILSCSSDRTI 334
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 32.3 bits (70), Expect = 0.073
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTK 459
H +S++Q S+ + SGSYDNS+ IW +
Sbjct: 535 HTAPISSLQFDSNHLYSGSYDNSVRIWDLR 564
Score = 29.5 bits (63), Expect = 0.51
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWS 453
H D+VS + S+I +GS D ++ +W+
Sbjct: 373 HSDYVSCLAIQDSFIATGSMDTTVRLWN 400
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 32.3 bits (70), Expect = 0.073
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 385 SAVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKA 507
SA +S I++GS+D++ +W+ GQ K + GH S V A
Sbjct: 103 SASALNSETIITGSWDSTARVWAL-GQCKYVLKGHQSSVWA 142
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 364 LMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTS 495
L H+D V ++ S S D + +W++ G+ + GHTS
Sbjct: 173 LAHNDCVRSLCQIPGGFASCSNDGVIKLWTSDGEFLYELHGHTS 216
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +1
Query: 370 HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKADHGFPSRAIKL 540
H D+V H WILS S D ++ IW+ + ++ +AI GH+ V PS + +
Sbjct: 94 HMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDLIV 153
Query: 541 HLLVDLMIK 567
+D ++
Sbjct: 154 SASLDQTVR 162
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +1
Query: 346 PTPQDCLM---HDDWVSAVQAHSS---WILSGSYDNSLHIWSTK 459
P +DCL H D+V+++ H + LSGS D L +WS K
Sbjct: 337 PVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIK 380
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 HDDWVSAVQAH--SSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVK 504
H WV V + W +G+ D ++ IW G KL + GH + V+
Sbjct: 162 HLGWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVR 209
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 412 ILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
+ SGS DN++ IW+ K + L + GHT+P+
Sbjct: 242 LASGSKDNTVRIWNVKLRTLLFTLSGHTAPI 272
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 406 SWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
+WI S SYD ++ IW K G+ + GH + V
Sbjct: 281 NWIYSSSYDKTIRIWDAKDGKCLHILKGHAARV 313
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +1
Query: 361 CLM-HDDWVSAVQAH--SSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
CL H ++VS++ + + ++SGS+D ++ IW+ + G +P H+ P+
Sbjct: 133 CLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPI 183
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIW--STKGQH 468
H+D + V+ + I+SG YD ++ IW +T QH
Sbjct: 428 HEDLIRTVRFNDEKIVSGGYDGTVRIWNFNTGEQH 462
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 334 RFPAPTPQDCLMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
RFPA QD D V VQ ++SGS D ++ +W + L + GH+ V
Sbjct: 210 RFPAD--QDFRATLDSVYCVQYDDEIMVSGSKDRTVSVWDVNSRFILYKLYGHSGSV 264
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 546 VSGSHDQTAILWVWNVPRNSVDCMITYRGH 635
+S S D TA +W + + CM RGH
Sbjct: 317 ISSSRDHTARVWRLDATSPAEACMHVLRGH 346
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.68
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 HDDWVS--AVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
H +VS A+ S + LS S+D ++ +W KG+ GHTS V
Sbjct: 62 HSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDV 108
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Frame = +1
Query: 358 DCLM----HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQH---KLAIPGHTSPVKA 507
DCL H V V H + ++SGSYDNS+ W G + GHT+ V A
Sbjct: 414 DCLAVLQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDDWALTCQLQGHTNTVWA 472
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIW-STKGQHKLAIPGHTSPVKADHGFPSR 528
H D V V I+S SYD +L +W ++ G + GH V + PSR
Sbjct: 576 HTDSVREVACLGDLIVSASYDGTLRVWKASTGVCLHVLRGHVGRVYSVTINPSR 629
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 295 VSTEDTLEVEYLERFPAPTPQDCLMHDDWV-SAVQAHSSWILSGSYDNSLHIWSTK 459
+S D V+ + D H+D+V +A ++ ++SG YD ++ +W T+
Sbjct: 140 LSGSDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWMSATRLVSGGYDGTIRLWDTR 195
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
D +G+ D T LW N+ N C+ + GH +
Sbjct: 375 DGVWLATGAKDNTVRLWNLNIEDNVYKCIHVFTGHTASV 413
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 WVSAVQAHSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
W + S + SGS D ++ IW+ Q + + GHT +
Sbjct: 511 WACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAI 552
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 403 SSWILSGSYDNSLHIWSTKGQHKLAI 480
+SW + S+DNS+ +W G++K I
Sbjct: 354 ASWNIYNSFDNSMVLWCPYGKNKTLI 379
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +1
Query: 412 ILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVK 504
+LSGS DN + IW L GH P++
Sbjct: 282 LLSGSMDNQIKIWEVYHDRSLLRTFQGHARPIR 314
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 656 EHFNSLVVTTVSDHTVNRISRYIPY 582
+ +++VTT + T N +S+Y+PY
Sbjct: 79 QSIENMIVTTKAGQTENALSKYLPY 103
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Frame = +1
Query: 382 VSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAIPG---HTSPVK--ADHGFPSRAI 534
V ++ AHS W+LSG + + ++ST+ Q + HT+PV A HG + +
Sbjct: 191 VYSLAAHSRGLWVLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL 248
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 724 KPLVNPQLPNLPKRFTRQPNTDQNI 650
+PL P L N +RF++ P+ QN+
Sbjct: 199 EPLDTPSLSNSQERFSKSPSDGQNV 223
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 718 LVNPQLPNLPKRFTRQPNTDQNISIPLS*PR*VIIQSTEFLGTFHT 581
L +P P+L K FT+ NT++ P S P+ + T F+ ++
Sbjct: 244 LASPMDPSLSKLFTKTTNTEKISPTPFSTPKRKSKKETVFVKAIYS 289
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 379 WVSAVQAHSSWILSGSYDNSLHIWSTK 459
W + S+ ++SG+ DN++ +W K
Sbjct: 56 WTCDINKSSTLMVSGAADNTMRLWDVK 82
>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 557 RSTNKCSLIALEGNP*SAFTGDV*PGMASLCCPFVLHICKLLS*LPDRI 411
+ST + IA G + PG+ + C VL IC LS LP++I
Sbjct: 130 KSTRQVYAIAHVGKDVGLDDDTIHPGLIATCMDEVLAICSFLS-LPNKI 177
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIW 450
H V A+ ++++SGS+D+S+ +W
Sbjct: 659 HHSEVWALAVGPTFVVSGSHDHSIRLW 685
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +1
Query: 334 RFPAPTPQDCLMHDDWVSAVQAHSSW--ILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVK 504
R P + +H+ + +Q S + SG DN+L +W + L HT+ VK
Sbjct: 236 RAPGCCAEMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWDYRSSRPLHKFEEHTAAVK 295
Query: 505 A 507
A
Sbjct: 296 A 296
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILWVWNVPRNSVDCM 617
D+ V+GS D T LW+ N+P NSV +
Sbjct: 115 DRRIVVTGSWDGTIKLWLGNLP-NSVQTL 142
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Frame = +1
Query: 310 TLEVEYLERFPAPTPQDCL----MHDDWVSAVQ----AHSSWILSGSYDNSLHIWS 453
T + R P C+ +H ++V V SWI S +D SL+IW+
Sbjct: 251 TASYDMTSRIFDPEQHSCIRKVDLHSEFVRDVDWSDFGDGSWIASVGWDESLYIWN 306
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 16 QTLTQLKILKYKMSGDALEAQLQVRFITKQEQYAVPD 126
Q + LKI++ K S D LEA ++ +F T + + + D
Sbjct: 97 QVQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKED 133
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 391 VQAHSSWILSGSYDNSLHIWSTKGQH 468
V +H+ +GS + S+ IW T GQ+
Sbjct: 1229 VHSHAPVYATGSSNQSIKIWDTLGQN 1254
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 370 HDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPV 501
H + V+A+ H W+ + S D ++ +W + H SPV
Sbjct: 82 HTNNVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNYDHKSPV 127
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIE 650
++ +SGS D + I VW+V + GH +GIE
Sbjct: 143 EEGLLLSGSTDASLI--VWDVSSQPSRLLYKLTGHSRGIE 180
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 270 EGGTKYSPHTKKSNITAFSNDGEVSFKIALIKVLRS 163
EGG ++ H +S I + E KIAL+K L S
Sbjct: 280 EGGGEFQDHGMRSEINEEVLEEEDEEKIALLKKLES 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,116
Number of Sequences: 5004
Number of extensions: 67126
Number of successful extensions: 310
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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