Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30980
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57108| Best HMM Match : WD40 (HMM E-Value=7.00649e-45) 33 0.18
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45) 33 0.18
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 33 0.31
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_30679| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_46201| Best HMM Match : WD40 (HMM E-Value=0) 31 0.95
SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17) 31 0.95
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 30 2.2
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45) 29 2.9
SB_32323| Best HMM Match : WD40 (HMM E-Value=0) 29 3.8
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) 29 3.8
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 29 5.1
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15) 29 5.1
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06) 28 6.7
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 28 8.9
SB_59126| Best HMM Match : zf-A20 (HMM E-Value=4.4) 28 8.9
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_14261| Best HMM Match : ig (HMM E-Value=0) 28 8.9
>SB_57108| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
Length = 243
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
+++ ++SGSYD +L +W K G KL + GH + V
Sbjct: 89 SIKVDDEKVVSGSYDKTLKVWDIKTGNCKLTLRGHNAAV 127
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 519 SFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
S + D VSGS+D+T L VW++ + +C +T RGH+ +
Sbjct: 89 SIKVDDEKVVSGSYDKT--LKVWDI--KTGNCKLTLRGHNAAV 127
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 525 QGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGH 635
Q D VSGS D+T + VW++ R ++T GH
Sbjct: 33 QFDDTRIVSGSSDKT--IKVWDLSREDTSAVLTLAGH 67
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHK---LAIPGHTSPVK 504
H +S VQ + I+SGS D ++ +W + L + GH+ V+
Sbjct: 25 HTQGISCVQFDDTRIVSGSSDKTIKVWDLSREDTSAVLTLAGHSGTVR 72
>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
Length = 870
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
+++ ++SGSYD +L +W K G KL + GH + V
Sbjct: 716 SIKVDDEKVVSGSYDKTLKVWDIKTGNCKLTLRGHNAAV 754
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 519 SFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
S + D VSGS+D+T L VW++ + +C +T RGH+ +
Sbjct: 716 SIKVDDEKVVSGSYDKT--LKVWDI--KTGNCKLTLRGHNAAV 754
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 525 QGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGH 635
Q D VSGS D+T + VW++ R ++T GH
Sbjct: 660 QFDDTRIVSGSSDKT--IKVWDLSREDTSAVLTLAGH 694
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHK---LAIPGHTSPVK 504
H +S VQ + I+SGS D ++ +W + L + GH+ V+
Sbjct: 652 HTQGISCVQFDDTRIVSGSSDKTIKVWDLSREDTSAVLTLAGHSGTVR 699
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 HDDWVSA--VQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
HD V+A + ++SGS D+++ +W TKG+ K + GHT+ V
Sbjct: 673 HDKGVTALLIMNDCRHLVSGSKDSTIRLWDLTKGECKQVMQGHTNEV 719
Score = 31.1 bits (67), Expect = 0.95
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 370 HDDWVSAVQAHSS-WILSGSYDNSLHIWSTKGQHKLAI-PGHTSPV 501
H+ ++A+ + W++SGS D+++ W + A+ GH+ PV
Sbjct: 337 HEGAINAILVTAKDWVISGSDDSTVRAWDLENGESCAVFQGHSKPV 382
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 298 STEDTLEVEYLERFPAPTPQDCLMHDDWVS--AVQAHSSWILSGSYDNSLHIWSTKGQ-H 468
S +D L+V E + Q + H W+S A+ I+SGS D ++ +W T G H
Sbjct: 481 SKDDLLKVWRTESWVCT--QTLIGHSSWISCVAMTTDGKTIISGSNDKNVKMWYTHGNAH 538
Query: 469 KLAI 480
AI
Sbjct: 539 AQAI 542
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 370 HDDWV-SAVQAHSSWILSGSYDNSLHIWST-KGQHKLAIPGHTSPV 501
HDD V + +Q S ++SGS D +L +WS G+ + GHT V
Sbjct: 317 HDDHVITCLQFSGSRVVSGSDDGTLKVWSALSGKCLRTLTGHTGGV 362
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 322 EYLERFPAPTPQDCLM----HDDWVSAVQAHSSWILSGSYDNSLHIWSTK-GQHKLAIPG 486
++L + P + C+ H + V ++Q ++I+SGS D S+ +W + GQ + G
Sbjct: 458 DFLVKVWDPETEQCIHTLQGHTNRVYSLQFDGTYIVSGSLDTSIRVWHAETGQCLHTLVG 517
Query: 487 HTS 495
H S
Sbjct: 518 HQS 520
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 253 VLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSSWILSGSYD 432
V + L+ H+ G ST+ TL+V E H V + H ++SGS D
Sbjct: 362 VWSSQLSGHIIVSG-STDRTLKVWNAET--GYCMHTLYGHTSTVRCMDMHEEVVVSGSRD 418
Query: 433 NSLHIW-STKGQHKLAIPGHTSPVK 504
+L +W +T G + GH + V+
Sbjct: 419 GTLRVWDTTTGNCLHVLVGHLAAVR 443
>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 31.9 bits (69), Expect = 0.54
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 400 HSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKA 507
+++WI +G +D + +WS GQ G ++P K+
Sbjct: 401 NNTWIFTGGFDKVVKVWSQDGQCMHKFDGFSAPYKS 436
>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 480 TRSYITSKSRSWVS-FQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
TR ++ + VS + D+ T VSGSHD T + VW++ + +C++ +GH+ +
Sbjct: 593 TRLHVLYGHKGCVSCLRFDENTLVSGSHDST--IRVWDM--RTWECVLVLQGHEGAV 645
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
H+ VS ++ + ++LSGS D ++ +W+ + G + GH V
Sbjct: 641 HEGAVSCLEFDAPFVLSGSADKTIKLWNVESGDCLNTLRGHADAV 685
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
H VS ++ + ++SGS+D+++ +W + + L + GH V
Sbjct: 601 HKGCVSCLRFDENTLVSGSHDSTIRVWDMRTWECVLVLQGHEGAV 645
>SB_30679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 31.5 bits (68), Expect = 0.72
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -2
Query: 698 QLAKTVYPSAEHRPEHFNSLVVTTVS--DHTVNRISRYIPYPEYCCLIMRSTNKC 540
Q T+YP+ ++ P+H+ L TT++ H R ++ P+PE R+ C
Sbjct: 78 QQHSTLYPTTDNNPQHYTPLQTTTLNTIPHYKQRTTK-SPFPESITAFRRNHLSC 131
>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
Length = 292
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 510 SWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
+++ + V+GS D TA W NS +CM T++GH+ I
Sbjct: 159 TYIDLDNNDDILVTGSADNTAKAW----GMNSNECMNTFKGHEGAI 200
>SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)
Length = 289
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWSTKGQHKLA--IPGHTSPVKA 507
A A + SGS+D S+ IW GQ A + GH S V+A
Sbjct: 94 AWDAEKRLLFSGSFDQSIIIWDIGGQQGTAFELQGHISKVQA 135
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
H V A+ H + SGS D ++ IWS + L +I GH +PV
Sbjct: 459 HTGPVWALCVHGELLFSGSSDKTIKIWSIETLELLDSIHGHENPV 503
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 397 AHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKAD 510
+H +++GS +L +WS G ++ +PG + + +D
Sbjct: 677 SHRGQLIAGSSGGNLRLWSVVGVAEMRLPGENNRLSSD 714
>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
Length = 2022
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 322 EYLERFPAPTPQDCLMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKG 462
+ LE A TP D L + W S+ A W ++ +Y S + S G
Sbjct: 1582 QVLEELIAETPSDLLSRELWCSSTGALEWWHMTKTYARSTAVMSMIG 1628
>SB_32323| Best HMM Match : WD40 (HMM E-Value=0)
Length = 611
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 364 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKADHGFPSRAI 534
L H D++ H WILS S D ++ IW+ + + + + GH V PS +
Sbjct: 90 LGHLDYIRTTFFHHEYPWILSSSDDQTIRIWNWQSRTCICVLTGHNHYVMCAQFHPSEDM 149
Query: 535 KLHLLVDLMIK 567
+ +D ++
Sbjct: 150 VVSASLDQTVR 160
>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
Length = 458
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 516 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIE 650
VS+ D SGS D+TA ++V + R ++D + Y+GH++ ++
Sbjct: 39 VSWSCDGRRLASGSFDRTASVFVLDKDRLTLDHI--YKGHNESVD 81
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 253 VLCASLAEHLQE--KGVSTEDTLEVEYLERFPAPTPQDCLMHDDW 381
++C S L E S+EDT+ V +L+ P P+ C+ ++W
Sbjct: 338 LICLSTDSELSEAMSHQSSEDTVRV-FLKTADTPAPEQCISPEEW 381
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 528 GDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIEMFWSV 665
G T +SGS D+TA +W+ P+ C++T GHD + W+V
Sbjct: 116 GKFGTLLSGSWDKTAKVWLG--PK----CVMTLEGHDAAV---WAV 152
>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
Length = 1224
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 149 LHWIA*GLSGTAYCSCLVINLTCN*ASKASPDILYFN 39
LH + G G Y CL I+LTC S + Y N
Sbjct: 727 LHSFSQGGGGAIYAECLKIHLTCQNVSVVNSSTAYAN 763
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 HSSWILSGSYDNSLHIWSTKGQHKLAI-PGHTSPV 501
+ ++ SGS D+ ++IW K + +A+ GHT V
Sbjct: 216 NQDFLASGSEDHQVYIWHVKNERPIAVLCGHTRTV 250
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWS 453
A+ S+I+SGS DN++ +WS
Sbjct: 232 AIYPFGSYIMSGSSDNTIRVWS 253
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 370 HDDWVSAVQA--HSSWILSGSYDNSLHIWSTK 459
H +WVS V S I+S SYD ++ IW +
Sbjct: 789 HKNWVSGVLVTPDSKRIISSSYDKTVKIWDVE 820
>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1123
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 22 LTQLKILKYKMSGDALEAQLQVRFITKQEQYAV--PDSPYAIQCNVTP 159
L QL LKY MSGD + ++ + Y + P P I N P
Sbjct: 518 LQQLLDLKYNMSGDNYDCKICDDIVQDASNYIISRPTKPATINSNALP 565
>SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06)
Length = 76
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 406 SWILSGSYDNSLHIW-STKGQHKLAIPGHT 492
S+++S S+D S+ +W +T G L + GH+
Sbjct: 4 SYVISTSWDESIRLWDTTSGTCSLTLRGHS 33
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 471 TSHTRSYITSKSR--SWV---SFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITY 626
T H + ++ S + +WV F D VSGS D+T LW R S DC+ T+
Sbjct: 56 TVHRQKFLYSLNAHMNWVRCAKFSPDGRLIVSGSDDKTIKLW----DRTSKDCVHTF 108
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 462 TTQTSHTRSYITSKSRSWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDK 641
T QT T S T S +S + +FVSG+ D +A LW C+ T+ GH+
Sbjct: 102 TAQTISTYSGHTGDVMS-LSLNPNNQSFVSGACDASAKLW----DIRGGTCVQTFTGHES 156
Query: 642 GI 647
I
Sbjct: 157 DI 158
>SB_59126| Best HMM Match : zf-A20 (HMM E-Value=4.4)
Length = 860
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 527 GRSSYIC*WIS*SNSNTLGMECT*KFC*LYDHLPWSRQGN 646
GR C W+S +NT G C +C + HL R+G+
Sbjct: 2 GRGKDYCEWLSIGRANTCGRRCLDTYCKV--HLQRLRKGS 39
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 409 WILSGSYDNSLHIWSTK 459
++ SGS+D +HIWST+
Sbjct: 347 YLASGSFDKRVHIWSTQ 363
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 370 HDDWVSAVQA--HSSWILSGSYDNSLHIWS-TKGQHKLAIPGHT 492
HD+ VS+V S I+S S+D S+ +W T Q + GH+
Sbjct: 86 HDNVVSSVSVDCEKSRIISASWDRSIKVWDLTSEQCIRTLKGHS 129
>SB_14261| Best HMM Match : ig (HMM E-Value=0)
Length = 1337
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 260 VPPSQSTYKKKGYRQRTRLRSNTWKGSLHQL 352
VPP K GYR R R+ ++G H+L
Sbjct: 896 VPPCTGNVKVYGYRGSDRCRNRPYRGRRHRL 926
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,975,642
Number of Sequences: 59808
Number of extensions: 526536
Number of successful extensions: 1648
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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