Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30980
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily ass... 51 7e-07
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 40 0.002
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 35 0.068
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 35 0.068
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical pr... 32 0.48
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 31 1.1
Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical pr... 30 1.5
X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein. 30 1.5
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 30 1.5
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 30 1.5
AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeri... 30 1.5
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 29 2.6
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 29 2.6
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical p... 29 4.5
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 28 5.9
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 28 5.9
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z19158-6|CAA79575.2| 615|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z19156-3|CAA79564.2| 615|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF079899-1|AAC83661.1| 615|Caenorhabditis elegans sodium- and c... 28 7.8
>U80447-5|AAB37809.1| 439|Caenorhabditis elegans Temporarily
assigned gene nameprotein 345 protein.
Length = 439
Score = 51.2 bits (117), Expect = 7e-07
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Frame = +1
Query: 70 EAQLQVRFITKQEQYA-VPDSPYAIQCNVTPCGP*YLNQRNFEGDLTIVREGGNI*FLSM 246
+ +Q+ F +K E+ +PD+ + + L + E + +E FL
Sbjct: 18 QKHVQITFFSKDEEIPQIPDAVFDVPTGAECDDMNLLLNKTIEANDGAWKER-RFEFLVG 76
Query: 247 WRVLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSSWILSGS 426
L SLAE ++E V TE L+VE + AP P + DWVS+VQ + I S +
Sbjct: 77 ETFLRTSLAEFIEEYEVETETILKVECVIGIEAPKPLHDIQAPDWVSSVQIANGHIFSTT 136
Query: 427 YDNSLHIWSTKGQH-KLAI 480
Y + I KG+ KLA+
Sbjct: 137 YGGDIVIVDRKGKETKLAV 155
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 370 HDDWVSAVQAH--SSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKA 507
H WV AV + W SG D + IW GQ KL++ GH S V+A
Sbjct: 183 HTGWVRAVDVEPGNQWFASGGADRIIKIWDLASGQLKLSLTGHISSVRA 231
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 370 HDDWVSAVQAH--SSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKA 507
H WV AV + W SG D + IW GQ KL++ GH S V+A
Sbjct: 183 HTGWVRAVDVEPGNQWFASGGADRIIKIWDLASGQLKLSLTGHISSVRA 231
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 295 VSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTK-GQ 465
VS D ++ E + + H+++V + SS ++SGS+D S+ IW K G
Sbjct: 145 VSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGM 204
Query: 466 HKLAIPGHTSPVKA 507
+P H+ PV A
Sbjct: 205 CIKTLPAHSDPVSA 218
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 409 WILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKADHGFPSRAI 534
WI+SGS D ++IW+ + + + + GHT PV A P + I
Sbjct: 315 WIISGSEDCKIYIWNLQTREIVQCLEGHTQPVLASDCHPVQNI 357
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 370 HDDWVSAVQAH--SSWILSGSYDNSLHIWST 456
H D VSAV + S I SGSYD + IW T
Sbjct: 212 HSDPVSAVSFNRDGSLIASGSYDGLVRIWDT 242
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 379 WVSAVQAHSSWILSGSYDNSLHIWST-KGQHKLAIPGHTSPVK 504
W S + +I+SGS D ++ +WST G + GHTS V+
Sbjct: 298 WTSQISQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVR 340
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 370 HDDWV-SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
H+D V + +Q H +++GS DN+L +W KG+ + GHT V
Sbjct: 252 HEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGV 297
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 379 WVSAVQAHSSWILSGSYDNSLHIWST-KGQHKLAIPGHTSPVK 504
W S + +I+SGS D ++ +WST G + GHTS V+
Sbjct: 300 WTSQISQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVR 342
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 370 HDDWV-SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
H+D V + +Q H +++GS DN+L +W KG+ + GHT V
Sbjct: 254 HEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGV 299
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 379 WVSAVQAHSSWILSGSYDNSLHIWST-KGQHKLAIPGHTSPVK 504
W S + +I+SGS D ++ +WST G + GHTS V+
Sbjct: 300 WTSQISQCGRYIVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVR 342
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 370 HDDWV-SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
H+D V + +Q H +++GS DN+L +W KG+ + GHT V
Sbjct: 254 HEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGV 299
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 ILSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKA 507
I SGS+D ++ IW + G +IPGH PV +
Sbjct: 205 IASGSFDETIRIWCARNGNTIFSIPGHEDPVSS 237
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 409 WILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKADHGFPSRAI 534
WI+SGS D+ ++IW+ + + L + GH + V P + I
Sbjct: 334 WIVSGSEDHKVYIWNLQTREILQTLDGHNTAVMCTDCHPGQNI 376
>Z48007-2|CAA88053.2| 1118|Caenorhabditis elegans Hypothetical
protein R134.2 protein.
Length = 1118
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 368 CTTIGCQLFRHTVVGFY-QEVMTIAYIYGAQKDNTN 472
C+T+ C T++G Y +++ + Y+YG NTN
Sbjct: 352 CSTVECMTANTTIMGGYARQLFDVVYLYGVALTNTN 387
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWS 453
H+ +S++ H + I+SGS+D ++ +W+
Sbjct: 487 HESAISSIDIHGNHIVSGSWDRTIKMWT 514
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 364 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKADHGFPSRAI 534
L H D++ H WI+S S D ++ IW+ + ++ +AI GH V P+ +
Sbjct: 92 LGHLDYIRTTFFHHKYPWIISASDDQTVRIWNWQSRNSIAILTGHNHYVMCAQFHPTEDL 151
Query: 535 KLHLLVDLMIK 567
+D ++
Sbjct: 152 VASASLDQTVR 162
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 370 HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKADHG 516
H+ +V Q H + + S S D ++ +W G K +PG +P + G
Sbjct: 136 HNHYVMCAQFHPTEDLVASASLDQTVRVWDISGLRKKQMPGGGAPSRPTGG 186
>Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical
protein F13D12.7 protein.
Length = 340
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 415 LSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKADHGFPS 525
+SG+ D S +W + G K PGH S + A FPS
Sbjct: 200 ISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPS 237
>X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein.
Length = 340
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 415 LSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKADHGFPS 525
+SG+ D S +W + G K PGH S + A FPS
Sbjct: 200 ISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPS 237
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 376 DWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLA-IPGHTSPVKA 507
+W + + +I +G DN + IW + K+A GH P+ A
Sbjct: 328 NWDAIFSSEGRYIFTGGNDNQVKIWDVENNKKVAQWDGHIKPLTA 372
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIEMFWSVFG*RV 680
D FVSGS D+T L VW + C T GH+KG+ + G R+
Sbjct: 246 DPEMFVSGSLDKT--LKVWKLGEQESIC--TLEGHEKGVNCVEFLTGGRI 291
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTK 459
H + V+ V +WI+SG+ D+++ IW+++
Sbjct: 318 HKNNVTFVTPFKTWIISGAEDSTVKIWNSQ 347
>AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeric G
protein beta subunit1 protein.
Length = 340
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 415 LSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKADHGFPS 525
+SG+ D S +W + G K PGH S + A FPS
Sbjct: 200 ISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPS 237
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
++ +FVS S D+T LW + + C TY+ H + +
Sbjct: 1119 NENSFVSASSDKTVKLWSIKPELDEIGCQWTYQKHTRPV 1157
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI 647
++ +FVS S D+T LW + + C TY+ H + +
Sbjct: 1119 NENSFVSASSDKTVKLWSIKPELDEIGCQWTYQKHTRPV 1157
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 364 LMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQ 465
L D V V H +W+L+ Y+ ++HIW+ + Q
Sbjct: 12 LARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQ 47
>U41559-10|AAC24264.2| 371|Caenorhabditis elegans Hypothetical
protein C26B2.4 protein.
Length = 371
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 436 YCHNFLIESNYCVPEQLTPNRRALNSPV-ELVQGTFP 329
YC N ESN C E+ R L+S V EL+Q T P
Sbjct: 130 YCENNYCESNMCREEENRLIDRMLSSTVHELIQKTSP 166
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
protein F48E3.3 protein.
Length = 1493
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 477 HTRSYITSKSRSWVSFQGDQATFVSGSHDQ 566
H + +S+ R+WVS QGD+ + V+ D+
Sbjct: 910 HVGKHASSQKRTWVSIQGDEHSVVTLPADE 939
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 319 VEYLERFPAPTPQDCLMHDDWVS--AVQAHSSWILSGSYDNSLHIWS 453
+ Y + + + H + VS A+ + ++LSGS+D S+ +W+
Sbjct: 582 IRYFDNTNGSIIHEAIAHVEGVSSLAIDPNGLYLLSGSHDGSIRMWN 628
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 319 VEYLERFPAPTPQDCLMHDDWVS--AVQAHSSWILSGSYDNSLHIWS 453
+ Y + + + H + VS A+ + ++LSGS+D S+ +W+
Sbjct: 582 IRYFDNTNGSIIHEAIAHVEGVSSLAIDPNGLYLLSGSHDGSIRMWN 628
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPG--HTSPVKADHGFPS 525
A A + I+SGS D S+ +W+T Q K I HT V PS
Sbjct: 118 AFSADNRQIVSGSRDKSIKLWNTLAQCKYTITDDCHTDWVSTVRFSPS 165
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +1
Query: 370 HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
H V+ V+A ++ +++S S+D +L +WST G L + GH + +
Sbjct: 421 HTSVVTRVRADAAGQYLVSASFDCTLKMWSTTGWQPLRQLQGHDTRI 467
>Z19158-6|CAA79575.2| 615|Caenorhabditis elegans Hypothetical
protein T23G5.5 protein.
Length = 615
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 404 VVGFYQEVMTIAYIYGAQKDNTN*PYQVIHHQ*KQIMGFLPGRSSYIC 547
++ + E M IAYIYG + Q +H K++MGF PG C
Sbjct: 478 LIAVFCEAMVIAYIYGLR--------QFVHDV-KEMMGFRPGNYWKFC 516
>Z19156-3|CAA79564.2| 615|Caenorhabditis elegans Hypothetical
protein T23G5.5 protein.
Length = 615
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 404 VVGFYQEVMTIAYIYGAQKDNTN*PYQVIHHQ*KQIMGFLPGRSSYIC 547
++ + E M IAYIYG + Q +H K++MGF PG C
Sbjct: 478 LIAVFCEAMVIAYIYGLR--------QFVHDV-KEMMGFRPGNYWKFC 516
>AF079899-1|AAC83661.1| 615|Caenorhabditis elegans sodium- and
chloride-dependentantidepressant- and cocaine-sensitive
dopamine transporterprotein.
Length = 615
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 404 VVGFYQEVMTIAYIYGAQKDNTN*PYQVIHHQ*KQIMGFLPGRSSYIC 547
++ + E M IAYIYG + Q +H K++MGF PG C
Sbjct: 478 LIAVFCEAMVIAYIYGLR--------QFVHDV-KEMMGFRPGNYWKFC 516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,505,922
Number of Sequences: 27780
Number of extensions: 381459
Number of successful extensions: 1060
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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