Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30980
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 76 2e-14
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 76 2e-14
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 35 0.048
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 34 0.11
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.45
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 32 0.45
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 31 0.59
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 31 0.59
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 31 0.59
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 31 0.78
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 31 0.78
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 31 0.78
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 0.78
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 31 0.78
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 31 1.0
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 30 1.4
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 1.4
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 30 1.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 1.8
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 30 1.8
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 29 2.4
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 29 2.4
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 29 2.4
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP... 29 2.4
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 29 3.1
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 3.1
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 29 3.1
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 29 3.1
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 29 3.1
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 29 3.1
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 4.1
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 4.1
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 4.1
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 29 4.1
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 29 4.1
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 28 5.5
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 28 5.5
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 28 5.5
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 5.5
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 7.2
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 28 7.2
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 28 7.2
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 28 7.2
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 7.2
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof... 27 9.6
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 76.2 bits (179), Expect = 2e-14
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Frame = +1
Query: 52 MSGDALEAQLQVRFITKQEQ-YAVPDSPYAIQCNVTPCGP*YLNQRNFEGDLTIVREGGN 228
+ G+ + +L V+F+TK + + VP + AI NVT G + E + +
Sbjct: 3 IDGEDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWKTEP- 61
Query: 229 I*FLSMWRVLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHS- 405
FL ++ SL E L KG+S E TLE+EY+ ++ +HDDWVSAV S
Sbjct: 62 FDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSP 121
Query: 406 SWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKA 507
+IL+G YD +WS+ G + GH+ + +
Sbjct: 122 RFILTGCYDGLGRVWSSAGSCSHILEGHSGAISS 155
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 370 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTK 459
H W+SA + H SSW +LS SYD + +W +
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLR 389
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 76.2 bits (179), Expect = 2e-14
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Frame = +1
Query: 52 MSGDALEAQLQVRFITKQEQ-YAVPDSPYAIQCNVTPCGP*YLNQRNFEGDLTIVREGGN 228
+ G+ + +L V+F+TK + + VP + AI NVT G + E + +
Sbjct: 3 IDGEDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWKTEP- 61
Query: 229 I*FLSMWRVLCASLAEHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHS- 405
FL ++ SL E L KG+S E TLE+EY+ ++ +HDDWVSAV S
Sbjct: 62 FDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSP 121
Query: 406 SWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKA 507
+IL+G YD +WS+ G + GH+ + +
Sbjct: 122 RFILTGCYDGLGRVWSSAGSCSHILEGHSGAISS 155
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 370 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTKGQHKLAI 480
H W+SA + H SSW +LS SYD + +W + L++
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSV 396
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.1 bits (77), Expect = 0.048
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +1
Query: 328 LERFPAPTPQDCLM----HDDWVSAVQAH--SSWILSGSYDNSLHIWSTK-GQHKLAIPG 486
L + A +P +CL H ++V V + S+ I+SGS+D ++ IW K G+ I
Sbjct: 109 LRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKA 168
Query: 487 HTSPVKADH 513
H+ P+ + H
Sbjct: 169 HSMPISSVH 177
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 510 SWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGI-EMFWS 662
S V F D S S D+T ILW + + Y GH GI ++ WS
Sbjct: 47 SCVKFSNDGNLLASASVDKTMILW----SATNYSLIHRYEGHSSGISDLAWS 94
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 HSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
+ +I+SGS DN +++W + ++ L + GHT V
Sbjct: 269 NGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAV 303
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 403 SSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKA 507
S+ I+SGS+D ++ IW T G+ +P H+ PV A
Sbjct: 125 SNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTA 160
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 412 ILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
I+SGS DN +H+W + L + GHT V
Sbjct: 258 IVSGSEDNCVHMWELNSKKLLQKLEGHTETV 288
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 406 SWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPVK 504
S + SGS DN++HIW+ + G + GH S VK
Sbjct: 131 SMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVK 164
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 364 LMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKADHGFPSRAI 534
L H D++ VQ H + WI+S S D ++ IW+ + + +++ GH V P +
Sbjct: 90 LGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDL 149
Query: 535 KLHLLVDLMIK 567
+ +D ++
Sbjct: 150 VVSASLDQTVR 160
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 415 LSGSYDNSLHIWSTKGQHKLAIPGHTSPV 501
LS S+D S+ +W+ G+ L + GHTS V
Sbjct: 205 LSASHDGSIRLWALSGEVLLEMVGHTSLV 233
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 415 LSGSYDNSLHIWSTKGQHKLAIPGHTSPV 501
LS S+D S+ +W+ G+ L + GHTS V
Sbjct: 205 LSASHDGSIRLWALSGEVLLEMVGHTSLV 233
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIW-----STKGQHKLAI-PGHTSPVKA 507
H + + S +LSGS D SL +W +G LA+ GHT PVK+
Sbjct: 327 HRKAIMCLAVASDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKS 378
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 409 WILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
WI S S+D S+ +W+ GQ GH PV
Sbjct: 374 WIASASFDKSVRLWNGITGQFVTVFRGHVGPV 405
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 397 AHSSWILSGSYDNSLHIWSTKGQH-KLAIPGHTSPVKA 507
A S +LSGS D++L IW + + K +PGH V A
Sbjct: 412 ADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFA 449
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 HDDWVSAVQAHSS--WILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVK 504
H WV +V S W +GS D ++ IW G KL + GH V+
Sbjct: 175 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVR 222
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 370 HDDWVSAVQAHSS--WILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVK 504
H WV +V S W +GS D ++ IW G KL + GH V+
Sbjct: 169 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVR 216
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 370 HDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKGQH 468
H+D+V+ +Q ++ LSGS D + IWS + +H
Sbjct: 545 HNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRH 580
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 364 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKADHGFPSRAI 534
L H D++ VQ H WI+S S D ++ IW+ + + +++ GH V P +
Sbjct: 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDL 149
Query: 535 KLHLLVDLMIK 567
+ +D ++
Sbjct: 150 VVSASLDQTVR 160
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 385 SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPV 501
S + ++ +GS D S+H+WS +KG + TSP+
Sbjct: 451 SCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPI 490
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIW 450
H D +S + H+ I SGS+D +L +W
Sbjct: 173 HADSISCLAVHAGIIYSGSWDKTLKVW 199
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 412 ILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
+ +GS D +HIW T + + +PGHT V
Sbjct: 287 VTAGSSDRMVHIWDTTSRRTIYKLPGHTGSV 317
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +3
Query: 456 KRTTQTSHTRSYITSKSRSWVS---FQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITY 626
K T + HT K +S V+ D + SGS D++ ++W N +
Sbjct: 263 KPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSNYMAVRGAL 322
Query: 627 RGHDKGIEMFWSV 665
RGHDK I ++V
Sbjct: 323 RGHDKAILSLFNV 335
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLA----IPGHTSPVKA 507
HD + ++ S +LSGS D ++ IW + + GHT PVK+
Sbjct: 325 HDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKS 374
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKG-QHKLAIPGHTSPVKA 507
H D V+A+ +I S S+D +L IW + K +I H V A
Sbjct: 194 HADAVTALAVSDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNA 240
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 388 AVQAHSSWILSGSYDNSLHIWSTK 459
A + +I SGS D S+HIWS K
Sbjct: 548 AFSPNGEYIASGSLDKSIHIWSIK 571
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 295 VSTEDTLEVEYLERFPAPTPQDCLMHDDWV---SAVQAHSSWILSGSYDNSLHIWSTK 459
VS D V+Y + A D L H D+V + S +++GSYD+++ +W +
Sbjct: 152 VSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDAR 209
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 382 VSAVQAHSSWILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVKADHGFP 522
VS ++ +W +SGS D++ +W T+ + GH V FP
Sbjct: 210 VSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFP 258
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 382 VSAVQAHSSWILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVKADHGFP 522
VS ++ +W +SGS D++ +W T+ + GH V FP
Sbjct: 148 VSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFP 196
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 382 VSAVQAHSSWILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVKADHGFP 522
VS ++ +W +SGS D++ +W T+ + GH V FP
Sbjct: 210 VSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFP 258
>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
(VPS41) 99.8% identical to Vacuolar assembly protein
VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
similar to vacuolar assembly protein vps41 GI:1835787
from [Lycopersicon esculentum]
Length = 980
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 274 EHLQEKGVSTEDTLEVEYLERFPAPTPQDCLMHDDWVSAVQAHSSWILSGSYDNSLHIWS 453
E +E G E+ ++Y +R P L+ +D S + + I G++D ++ I
Sbjct: 29 EEEEENGDEAEEEPRLKY-QRMGGNVP--ALLSNDAASCIAVAARMIALGTHDGTVRILD 85
Query: 454 TKGQHKLAIPGHTSPV 501
G HT+PV
Sbjct: 86 LLGNQVKEFRAHTAPV 101
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 403 SSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 501
SS+I SGS D+ ++IW+ K L + GH+ V
Sbjct: 455 SSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTV 488
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 516 VSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIEM 653
V+F F SGS D L +W++ + C+ TY+GH +G+ +
Sbjct: 200 VNFHPFGEFFASGSLDTN--LKIWDIRKKG--CIHTYKGHTRGVNV 241
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 516 VSFQGDQATFVSGSHDQTAILWVW 587
VSF D +SGS D+ ILW W
Sbjct: 61 VSFNADGDILLSGSDDRQVILWDW 84
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 382 VSAVQAHSSWILSGSYDNSLHIWSTKGQ-HKL--AIPGHTSPVK 504
V ++ S + SGS D ++ +W G H + GHT PVK
Sbjct: 341 VLCLEVAGSLVFSGSADKTICVWKRDGNIHTCLSVLTGHTGPVK 384
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +3
Query: 510 SWVSFQGDQATFVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIEMFWSVFG*RVNRF 689
S V F SGS D A L +W++ + C+ TY+GH +GI RF
Sbjct: 104 SAVEFHPFGEFLASGSSD--ANLKIWDIRKKG--CIQTYKGHSRGISTI---------RF 150
Query: 690 GKLGSWGLTNGL 725
G W ++ GL
Sbjct: 151 TPDGRWVVSGGL 162
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKA 507
H W+ +++ +++GS D + +WS ++G + H PV++
Sbjct: 1021 HTKWIRSIRMVEDTLITGSDDWTARVWSVSRGSCDAVLACHAGPVQS 1067
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = +1
Query: 358 DCL---MHDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKG 462
DCL H+ +V++VQ + ++ +SGS D + IW+ G
Sbjct: 360 DCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISG 400
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 543 FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIEM 653
F SGS D L +W++ + C+ TY+GH +G+ +
Sbjct: 116 FASGSLDTN--LKIWDIRKKG--CIHTYKGHTRGVNV 148
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 543 FVSGSHDQTAILWVWNVPRNSVDCMITYRGHDKGIEM 653
F SGS D L +W++ + C+ TY+GH +G+ +
Sbjct: 116 FASGSLDTN--LKIWDIRKKG--CIHTYKGHTRGVNV 148
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 516 VSFQGDQATFVSGSHDQTAILWVWNV 593
VSF + +SGS D+ +LW W +
Sbjct: 65 VSFNAEGDVLISGSDDRRVVLWDWQL 90
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +1
Query: 346 PTPQDCLM----HDDWVSAVQAHSS--WILSGSYDNSLHIWSTK 459
P P C + H V+++ SS WI SGS D S+ +W +
Sbjct: 410 PYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVE 453
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 364 LMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAI 480
L H DWV + H + + S S + ++IW + LAI
Sbjct: 293 LRHSDWVWGLAPHETTLASTS-GSDVYIWDVSSETPLAI 330
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 406 SWILSGSYDNSLHIW-STKGQHKLAIPGHTSPVKADHGFPSRAIKLHLL 549
++I SGS D+ ++IW + G+ + +PGH V P+ LH+L
Sbjct: 502 AFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPT---NLHML 547
>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 276 LCEGGTKYSPHTKKSNITAFSNDGEVSFKIALIKVLRSAGCDVTLDSVRTIRN 118
L E G ++ S I+AF+N G + + K + GC TL + I N
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 276 LCEGGTKYSPHTKKSNITAFSNDGEVSFKIALIKVLRSAGC 154
+ E GTK T + ++ F G+V +++ + +R+AGC
Sbjct: 375 MAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGC 415
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSP 498
H VS + + + SGS+D ++ +WS L + G +P
Sbjct: 626 HKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETP 668
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 409 WILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 501
++LS S D ++ +WSTK + + GH PV
Sbjct: 432 FVLSSSADTTIRLWSTKLNANLVCYKGHNYPV 463
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 355 QDCLMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKADHGFPSRA 531
+D + WV A + + +L+GS D ++ +W + GH+ V A PS
Sbjct: 14 EDSVWAATWVPATEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGI 73
Query: 532 IKLHLLVDLMIK 567
I +D ++
Sbjct: 74 IAASSSIDSFVR 85
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 531 DQATFVSGSHDQTAILW 581
D + F++GSHD+TA LW
Sbjct: 231 DDSHFLTGSHDKTAKLW 247
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 355 QDCLMHDDWVSAVQAHS-SWILSGSY 429
+D + DWVS V HS SW+LS ++
Sbjct: 82 RDGMQEKDWVSLVAVHSDSWLLSVAF 107
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 370 HDDWVSAVQAHSSWILSGSYDNSLHIW 450
HDD V++V S + +GS D ++ +W
Sbjct: 176 HDDAVNSVTTAESLVFTGSADGTVKVW 202
>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
profile: PF04283 protein of unknown function (DUF439)
Length = 1197
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 327 LGKVPCTNSTGLFNARRLGVSCSGTQ*LD 413
+GK N+ G RR G++CS +Q +D
Sbjct: 752 IGKKVFVNAAGFLRIRRSGLACSSSQFID 780
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,985
Number of Sequences: 28952
Number of extensions: 354321
Number of successful extensions: 1039
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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