Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30979
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.9  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 208 KRKKKNCYQNQETSDCRNCS 267
           KR+KKN  QNQ      +CS
Sbjct: 9   KRRKKNLNQNQMMIWALDCS 28


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 395 CFRYLKCSSSKHTIRKTAN*C 457
           C + + CS+ K    KT+N C
Sbjct: 87  CNKCIGCSAEKFECSKTSNPC 107


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 268 ENNFDNHSFLDFDNNFFSCAFIKSS 194
           ENN  N  F++F  + F C +  +S
Sbjct: 418 ENNRRNPWFVEFWEHHFQCRYPNAS 442


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 186 PKHTIICKEFEIVIY 142
           P H ++C+ F   IY
Sbjct: 191 PSHCVVCQNFFYQIY 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,668
Number of Sequences: 438
Number of extensions: 2152
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)