Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30975
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    44   2e-05
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    38   0.001
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    32   0.094
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    30   0.29 
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   3.5  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   8.2  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 2   APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKT-QLPHPLY 178
           +P PR  HS   +      ++FV GG +      D+W  D+  L WT ++   + P P  
Sbjct: 244 SPPPRSNHSVTLVQG----KIFVHGGHNDTGPLSDLWLFDLETLSWTEVRSIGRFPGPRE 299

Query: 179 FHSSTVTSSGCMYIFGGIEPK 241
            H +T T    +YI+GG + K
Sbjct: 300 GHQAT-TIDDTVYIYGGRDNK 319



 Score = 32.7 bits (71), Expect = 0.054
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +2

Query: 38  IDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQ-WTLMKKTQLPHPLYFHSSTVTSSGCM 214
           +D+ N   +++ GG +   +   +++LD+     ++  +      P     S V S+  +
Sbjct: 66  LDAANEKFMYLHGGREKSGISNSLFKLDLDSCTVYSHNRGEDNDSPARVGHSIVCSADTI 125

Query: 215 YIFGGIEPKEDANLEIIFCIKYGYVYQNS 301
           Y+FGG + + D+  E+     Y Y ++++
Sbjct: 126 YLFGGCDSETDSTFEVGDNSLYAYNFKSN 154


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 59  QVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQL-PHPLYFHSSTVTSSGCMYIFGG 229
           ++++ GG+DG   F D+W        W+ ++   + P+P   H+++V   G +Y+FGG
Sbjct: 254 KLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVV-EGILYVFGG 310



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 104 DIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGIE 235
           D+  L+ +D +W L      P P        T S  +YIFGG +
Sbjct: 219 DLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYIFGGTD 262


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +2

Query: 53  GVQVFVAGGSDG--QAVFEDIWRLDIADLQWTLMKK--TQLPHPLYFHSSTVTSSGCMYI 220
           G + FV GG D     +  D++ +D+    W  ++    Q P P YFHS  + ++  ++ 
Sbjct: 41  GDEAFVYGGRDALNAQLVNDMYVVDLNTCSWKQVEYQGNQKPIPRYFHSGDLWNNKLIF- 99

Query: 221 FGGIEPKED 247
           FGG+   +D
Sbjct: 100 FGGMGFNDD 108


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 44  SPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTV-TSSGCMYI 220
           +P    +++ GG DG   F D W  ++    W +  +  +P     H   + TS   +Y+
Sbjct: 271 NPKDNCIYLYGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERVCHRMVIDTSQQKLYL 330

Query: 221 FG 226
            G
Sbjct: 331 LG 332


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 537 NHKFNNNVY-FSNFKFILCRTT*MNERTDLKICKSILVVL 653
           N++ +  VY F  FK   CR + +NE  D  + +S L++L
Sbjct: 628 NNENDKYVYEFDPFKIANCRASGLNETIDSSVRESFLLLL 667


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 101 QKPLDHLNHLLQTLEHHLVNLF 36
           Q  LDHLN ++Q+L   + N F
Sbjct: 196 QSGLDHLNKIMQSLNFSVENFF 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,813
Number of Sequences: 5004
Number of extensions: 67274
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)