Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30975
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34) 85 7e-17
SB_32939| Best HMM Match : Kelch_2 (HMM E-Value=1.7e-18) 43 2e-04
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_43498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
Length = 405
Score = 84.6 bits (200), Expect = 7e-17
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFH 184
P R+CH V V++ GG DGQ ++ D+W LD+ QWT + K LP+P+YFH
Sbjct: 277 PPRRRCHGCVLYKDA----VYICGGYDGQTIYNDVWSLDLVRFQWTKLPKI-LPYPVYFH 331
Query: 185 SSTVTSSGCMYIFGGIE 235
S+ +T GCMYIFGG++
Sbjct: 332 SAAITPGGCMYIFGGVK 348
Score = 35.9 bits (79), Expect = 0.033
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 256 RNNILYKVWLCIPKLSEICWEALTSFHPNLDQVDRNTLLNTGVPLHFV 399
R++ ++K+WL +P L ++ + L S P+++ V G+P H +
Sbjct: 357 RSSDIHKLWLTVPSLLDLSVQCLMSHVPDVEHVSPEKFAELGIPPHLI 404
>SB_32939| Best HMM Match : Kelch_2 (HMM E-Value=1.7e-18)
Length = 493
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 11 PRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLP-HP-LYFH 184
P + + D+ G+ +++ GG +G + +D+W+ D+ W+ + ++LP P F
Sbjct: 175 PVRVKQSYWCDASKGI-LYIYGGDNGAKIIDDMWKFSFKDMAWSSITFSKLPTFPGSRFS 233
Query: 185 SSTVTSSGCMYIFGG 229
++ ++G +Y+FGG
Sbjct: 234 ATAWENNGTLYLFGG 248
>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 62 VFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGIEPK 241
++V GGS + F D+ +LD W+L++ +HS T+ G M++ GG+ P
Sbjct: 507 LYVYGGSKNKRWFSDVHKLDTTSWTWSLVQTVGKAPTRSYHSCTL-YRGEMWVIGGVYPN 565
Query: 242 ED 247
D
Sbjct: 566 PD 567
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKT-QLPHPLYF 181
P PR HS+ +DS ++ + GG D + D++ LD+ ++++ T P P +
Sbjct: 597 PTPRSGHSSCLLDS----KLVIFGGWDAPTCYNDMFLLDMTFIEFSKPPVTGTTPSPRSW 652
Query: 182 HSSTVTSSGCMYIFGGIEPKEDANLEIIF 268
H+S M I GG + N IF
Sbjct: 653 HASVQLPGNKMLISGGFDGIHTTNDTFIF 681
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYF 181
AP PR H S N + +F G S F D++ LD+ D +WT ++ + P P
Sbjct: 84 APSPRFSHGCCV--SRNSMYIF-GGCSPSNTAFNDVFELDLKDHKWTRLRISGSPPPPKE 140
Query: 182 HSSTVTSSGCMYIFGG 229
++ V + +FGG
Sbjct: 141 CATMVAHKKRVIVFGG 156
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQW-TLMKKTQLPHPLYF 181
P R H+A ++ ++ V GG+ Q+ F D+W LD+ D+QW T + + + P +
Sbjct: 200 PCERAGHAACIVED----RMIVFGGAQRQSRFNDVWVLDLNDMQWSTPLVRGRRPSGRFG 255
Query: 182 HS 187
HS
Sbjct: 256 HS 257
>SB_43498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 53 GVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGI 232
G +F+ GG G +F+D+++ + + WT + T P + V +Y+FGG+
Sbjct: 151 GTSIFLHGGMAGSDMFDDLFQFNTENNSWTKLNPTGDVPPSRTAHAAVAIGHRLYLFGGM 210
Score = 31.1 bits (67), Expect = 0.93
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 59 QVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSS--GCMYIFGGI 232
QV V GG++ F D++ LD+ +W K L Y HS+ + S +FGG
Sbjct: 52 QVMVVGGANPDGSFADLFILDLETFKWDSPKCPGL-LARYEHSAFIPKSHPERFVVFGGA 110
Query: 233 EPKEDAN 253
+ ++ N
Sbjct: 111 QQDQNLN 117
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 33.1 bits (72), Expect = 0.23
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFH 184
P PR H AV I + GV V V GG Q V ++W L ++ WT + + + H
Sbjct: 472 PTPRYFHCAV-IHA--GVMV-VFGGLTEQGVSNEVWHLSLSPPSWTRKEPSTPGIAVAGH 527
Query: 185 SSTVTSSGCMYIFGGIEPKEDAN 253
+ T+ + + GG +P N
Sbjct: 528 TCTLVGD-VITVIGGYDPGSGFN 549
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 62 VFVAGGSDGQAVFEDIWRLDIADLQWT--LMKKTQLPHPLYFHSSTVTSSGCMYIFGG 229
+ V GG G + ++W+ ++ W + P P+ H++ + +Y++GG
Sbjct: 204 LLVFGGDTGTGLSNELWQFNLTSRLWAQLAVSDPNTPPPVVDHTANIVGDK-LYVYGG 260
>SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 59 QVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGG 229
+V+ GGSDGQ + D +WT + P +H V G +Y GG
Sbjct: 429 KVYAVGGSDGQHRIASVDCYDTFTKEWT--ATAPMLEPRMYH-GVVALGGLLYAVGG 482
>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 26 SAVQIDSPNGVQVFVAGGSDGQAVFEDIWR-LDIADLQWTLMKKTQLPH 169
S+ + SP Q ++ S+G A ++IW+ LD + +L Q PH
Sbjct: 1145 SSQRTSSPRRDQAYMTSSSEGHASLQEIWKLLDEEESFRSLSPVKQRPH 1193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,965,883
Number of Sequences: 59808
Number of extensions: 446448
Number of successful extensions: 843
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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