Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30975
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical ... 44 8e-05
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 40 0.001
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 40 0.001
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 40 0.002
Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical pr... 37 0.013
U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein ... 37 0.013
Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical p... 33 0.20
Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical p... 33 0.20
Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical pr... 33 0.27
AC006679-9|AAK84461.1| 153|Caenorhabditis elegans Hypothetical ... 33 0.27
U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical... 29 4.4
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81046-5|CAB02823.1| 225|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z68009-3|CAA92005.1| 817|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 28 7.7
AL022289-1|CAA18372.1| 354|Caenorhabditis elegans Hypothetical ... 28 7.7
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 28 7.7
>AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical
protein Y67H2A.2a protein.
Length = 553
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQA------VFEDIWRLDIADLQWTLMKKTQLP 166
P R+CH+ V+ G +V ++GG D + ++W D+ W + LP
Sbjct: 274 PKNRRCHTLVR----RGRKVIISGGVDHPTTPTTAELHNNVWIFDLDTSSWEKSDQV-LP 328
Query: 167 HPLYFHSSTVTSSGCMYIFGGI 232
++FH +T+T G M FGG+
Sbjct: 329 EKVFFHDTTITEDGWMLTFGGV 350
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMK----KTQL-PH 169
P+ R+ H+AV + + ++ V GG +G + D+W L++ L WT +K +T + P
Sbjct: 209 PISRESHTAVIYEKDSISRMVVYGGMNGVRL-GDLWYLNLNTLHWTEIKFDDPRTGIPPM 267
Query: 170 PLYFHSSTVTSSGCMYIFGGIEP 238
P HSS + M+++GG P
Sbjct: 268 PRSLHSSVLIGDK-MFVYGGWVP 289
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMK----KTQL-PH 169
P+ R+ H+AV + + ++ V GG +G + D+W L++ L WT +K +T + P
Sbjct: 209 PISRESHTAVIYEKDSISRMVVYGGMNGVRL-GDLWYLNLNTLHWTEIKFDDPRTGIPPM 267
Query: 170 PLYFHSSTVTSSGCMYIFGGIEP 238
P HSS + M+++GG P
Sbjct: 268 PRSLHSSVLIGDK-MFVYGGWVP 289
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 92 AVFEDIWRLDIADLQWTLMKKTQLPHP-LYFHSSTVTSSGCMYIFGG 229
AVF D+WRLD A L+W+ + + P+P ++S VT + +FGG
Sbjct: 167 AVFNDLWRLDTATLKWSRVIISSAPYPSAMCYASLVTWGTQLILFGG 213
>Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical
protein R10H10.2 protein.
Length = 570
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 62 VFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGG 229
+++ GGS GQ + W+L QW P Y +S+V G +Y+FGG
Sbjct: 293 LYLFGGSTGQRTRCETWKLSTETWQWDRCNNMMEPRN-YISNSSVVYDGRIYVFGG 347
>U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein
protein.
Length = 570
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 62 VFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGG 229
+++ GGS GQ + W+L QW P Y +S+V G +Y+FGG
Sbjct: 293 LYLFGGSTGQRTRCETWKLSTETWQWDRCNNMMEPRN-YISNSSVVYDGRIYVFGG 347
>Z82059-11|CAC42351.2| 591|Caenorhabditis elegans Hypothetical
protein T27E9.4b protein.
Length = 591
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 62 VFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGIE 235
+++ GG DG +F + RLD + QW + + + F ++T G +Y+ GG +
Sbjct: 447 IYICGGHDGMQIFASVERLDTENQQWERI-PSMIQQRCRFGAATF--KGKIYVAGGYD 501
>Z82059-10|CAB04878.2| 589|Caenorhabditis elegans Hypothetical
protein T27E9.4a protein.
Length = 589
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 62 VFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGIE 235
+++ GG DG +F + RLD + QW + + + F ++T G +Y+ GG +
Sbjct: 445 IYICGGHDGMQIFASVERLDTENQQWERI-PSMIQQRCRFGAATF--KGKIYVAGGYD 499
>Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical
protein T16H12.6 protein.
Length = 566
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 14 RKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQW 139
R SA Q+D+ ++VAGG DGQA ++ RLD+ W
Sbjct: 488 RSNFSACQMDT---CSIYVAGGFDGQATTKESERLDLRSKMW 526
>AC006679-9|AAK84461.1| 153|Caenorhabditis elegans Hypothetical
protein R13A5.10 protein.
Length = 153
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 431 DNYFQSGCNLFTKCNGTPVFSNVFLSTWSRLGWNEVSASQQISLSFGIHNH 279
DN+ SGC L+T C P+ L WSR+ A+ Q + + G +H
Sbjct: 64 DNFDLSGCQLYTSCYPCPMCMGAAL--WSRVDAIYYGATSQDAANIGFGDH 112
>U22831-6|AAK20068.1| 579|Caenorhabditis elegans Hypothetical
protein F47D12.7 protein.
Length = 579
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 14 RKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQW 139
R SA Q+D+ V+VAGG DGQ ++ RLD+ W
Sbjct: 501 RSNFSACQMDT---CYVYVAGGFDGQTTTKESERLDLRSKMW 539
>AF067219-16|AAC17022.1| 531|Caenorhabditis elegans Hypothetical
protein R12E2.1 protein.
Length = 531
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 20 CHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVT 199
C ++V + + NG ++ GG DG++ + + + D +W K S
Sbjct: 392 CRTSVGVAAFNG-SLYAVGGQDGESCLDVVEKYDPRKNEWA---KVASMGTRRLGVSVSV 447
Query: 200 SSGCMYIFGG 229
+GC+Y GG
Sbjct: 448 VNGCIYAVGG 457
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 389 NGTPV--FSNVFLSTWSRLGWNEVSASQQISLSFGIH 285
NG+PV F+ + WS L WN ASQ I S H
Sbjct: 197 NGSPVLEFAEIPGCDWSSLSWNPSDASQLIVSSQSQH 233
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 389 NGTPV--FSNVFLSTWSRLGWNEVSASQQISLSFGIH 285
NG+PV F+ + WS L WN ASQ I S H
Sbjct: 197 NGSPVLEFAEIPGCDWSSLSWNPSDASQLIVSSQSQH 233
>Z81046-5|CAB02823.1| 225|Caenorhabditis elegans Hypothetical
protein C37E2.2a protein.
Length = 225
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 513 CCSYIVMIKIIALEEK*LLQSASFLHFRQLFPVWM 409
C Y VMI + EK L + + F+HF +FPV M
Sbjct: 50 CVFYSVMILLGYKSEK-LQKISDFMHFTSIFPVGM 83
>Z68009-3|CAA92005.1| 817|Caenorhabditis elegans Hypothetical
protein R09A8.3 protein.
Length = 817
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Frame = +2
Query: 2 APLPR----KCHSA-VQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADL-----QWTLMK 151
APLP +CH+ ID+ V+ GGS Q V +D RLD L +W M
Sbjct: 590 APLPNLATARCHNGCATIDN----YVYCIGGSFDQKVLKDCERLDTTKLGTEEAEWEPM- 644
Query: 152 KTQLPHPLYFHSSTVTSSGCMYIFGGIE 235
+ HP Y + T G + GG +
Sbjct: 645 -ASMEHPRY-QAGVCTWKGLVVAAGGCD 670
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 481 NNFYHYYIGT---ALPKNGSKSTINLTIMFIFQTLNLSYVER 597
NN +YI LPKN + N I+F LNL Y+ R
Sbjct: 862 NNIDCFYISQNYIKLPKNTIRENANFFIVFTQDKLNLDYIYR 903
>AL022289-1|CAA18372.1| 354|Caenorhabditis elegans Hypothetical
protein ZK1225.1 protein.
Length = 354
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 109 LEVRHC*SAMDP-YEKNSVTSSFVLPFINSHVLWLHVYIWWD 231
LE RH ++ P + +N++T SF P I S VL + +WW+
Sbjct: 163 LEFRHFEASRYPDFVRNALTYSFK-PLIISEVLKEYPMVWWN 203
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 481 NNFYHYYIGT---ALPKNGSKSTINLTIMFIFQTLNLSYVER 597
NN +YI LPKN + N I+F LNL Y+ R
Sbjct: 826 NNIDCFYISQNYIKLPKNTIRENANFFIVFTQDKLNLDYIYR 867
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,058,926
Number of Sequences: 27780
Number of extensions: 369953
Number of successful extensions: 849
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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