Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30975
(716 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36360.1 68415.m04462 kelch repeat-containing protein low sim... 39 0.004
At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep... 38 0.007
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 37 0.015
At1g54040.2 68414.m06158 kelch repeat-containing protein contain... 35 0.047
At1g54040.1 68414.m06157 kelch repeat-containing protein contain... 35 0.047
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar... 34 0.082
At5g01660.1 68418.m00082 kelch repeat-containing protein similar... 34 0.11
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin... 33 0.14
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin... 33 0.14
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 33 0.25
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 33 0.25
At5g48180.1 68418.m05952 kelch repeat-containing protein contain... 31 0.76
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z... 30 1.3
At1g46912.1 68414.m05219 F-box family protein-related contains w... 30 1.8
At5g41040.2 68418.m04989 transferase family protein similar to h... 29 4.1
At5g41040.1 68418.m04988 transferase family protein similar to h... 29 4.1
At5g04420.1 68418.m00435 kelch repeat-containing protein low sim... 28 5.4
At4g15290.1 68417.m02341 cellulose synthase family protein simil... 28 5.4
At1g54360.2 68414.m06198 expressed protein 28 7.1
At1g54360.1 68414.m06197 expressed protein 28 7.1
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr... 27 9.4
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr... 27 9.4
>At2g36360.1 68415.m04462 kelch repeat-containing protein low
similarity to rngB protein, Dictyostelium discoideum,
PIR:S68824; contains Pfam profile PF01344: Kelch motif
Length = 496
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWT-LMKKTQLPHPLYF 181
P PR H A+ ID +F+ GG G D W LD QW+ L LP P F
Sbjct: 74 PTPRAFHVAITIDC----HMFIFGGRSGGKRLGDFWVLDTDIWQWSELTSFGDLPTPRDF 129
Query: 182 HSSTVTSSGCMYIFGGIEPKE 244
++ S + + GG + K+
Sbjct: 130 AAAAAIGSQKIVLCGGWDGKK 150
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQW-TLMKKTQLPHPLYF 181
P PR +A I S ++ + GG DG+ D++ +D L+W L LP P
Sbjct: 124 PTPRDFAAAAAIGSQ---KIVLCGGWDGKKWLSDVYVMDTMSLEWLELSVSGSLPPPRCG 180
Query: 182 HSSTVTSSGCMYIFGG 229
H++T+ + +FGG
Sbjct: 181 HTATMVEKR-LLVFGG 195
>At4g04670.1 68417.m00683 Met-10+ like family protein / kelch
repeat-containing protein contains Pfam profiles
PF01344: Kelch motif, PF02475: Met-10+ like-protein
Length = 995
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGG-SDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLY 178
+P R H+A + G +FV GG +D + D+WRLDI+ +W+ + P
Sbjct: 321 SPSARLGHTASMV----GDFMFVIGGRADPLNILNDVWRLDISTGEWSSQRCVGSEFPPR 376
Query: 179 FHSSTVTSSGCMYIFGGI 232
+ + +YIFGG+
Sbjct: 377 HRHAAASVGTKVYIFGGL 394
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGS--DGQA--VFEDIWRLDIADLQWTLMKKTQLPH 169
AP PR + ++ I+ ++ + GG +GQ V+ D++R D+ +W L+ P
Sbjct: 65 APSPRS-NCSLTINPLKETELILYGGEFYNGQKTYVYGDLYRYDVEKQEWKLVSSPNSPP 123
Query: 170 PLYFHSSTVTSSGCMYIFGG 229
P H + V +YIFGG
Sbjct: 124 PRSSHQA-VAWKNYLYIFGG 142
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +2
Query: 80 SDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGI---EPKEDA 250
S+ V D+W LD +W +KK +P S +FGG+ E + D
Sbjct: 264 SEKGIVHADLWSLDPRTWEWNKVKKIGMPPSSRAGFSVCVHKKRALLFGGVVDMEMEGDV 323
Query: 251 NLEIIFCIKYGYVYQN 298
+ + YG+ N
Sbjct: 324 MMSLFLNELYGFQLDN 339
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGG---SDGQAVF---EDIWRLDIADLQWTLMKKTQL 163
+P PR H AV + +++ GG S Q F +D W LD+ QW +
Sbjct: 121 SPPPRSSHQAVAWKN----YLYIFGGEFTSPNQERFHHYKDFWMLDVKTNQWEQLNLKGC 176
Query: 164 PHPLYFHSSTVTSSGCMYIFGG 229
P P H V + IFGG
Sbjct: 177 PSPRSGH-RMVLYKHKIIIFGG 197
>At1g54040.2 68414.m06158 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (4 repeats); similar to
jsimilar to epithiospecifier (GI:16118838) [Arabidopsis
thaliana] isioform contains AT-AG splice sites at intron
Length = 341
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 53 GVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQL---PHPLYFHSSTVTSSGCMYIF 223
G ++++ GG D FE+ D +WT + K P FH S + +Y+F
Sbjct: 85 GTKIYIFGGRDENRNFENFRSYDTVTSEWTFLTKLDEVGGPEARTFH-SMASDENHVYVF 143
Query: 224 GGI 232
GG+
Sbjct: 144 GGV 146
>At1g54040.1 68414.m06157 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (4 repeats); similar to
jsimilar to epithiospecifier (GI:16118838) [Arabidopsis
thaliana] isioform contains AT-AG splice sites at intron
Length = 261
Score = 35.1 bits (77), Expect = 0.047
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 53 GVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQL---PHPLYFHSSTVTSSGCMYIF 223
G ++++ GG D FE+ D +WT + K P FH S + +Y+F
Sbjct: 5 GTKIYIFGGRDENRNFENFRSYDTVTSEWTFLTKLDEVGGPEARTFH-SMASDENHVYVF 63
Query: 224 GGI 232
GG+
Sbjct: 64 GGV 66
>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
RING finger rngB protein, cytosolic - Dictyostelium
discoideum, PIR:S68824; contains Pfam profiles PF01344:
Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
Length = 648
Score = 34.3 bits (75), Expect = 0.082
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTL-MKKTQLPHPLYF 181
P PR H+A + + + +F GG F+D+ LD+ ++W+ ++ P P
Sbjct: 344 PTPRSDHAAA-VHAERYLLIF--GGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAG 400
Query: 182 HSSTVTSSGCMYIFGGIEPKEDANLEII 265
H+ VT YI GG + K A+ ++
Sbjct: 401 HAG-VTIGENWYIVGGGDNKSGASKTVV 427
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPL 175
AP PR H+ V I G ++ GG D ++ L+++ L W+++ Q PL
Sbjct: 394 APTPRAGHAGVTI----GENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPL 447
>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
profile PF01344: Kelch motif
Length = 621
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/95 (23%), Positives = 43/95 (45%)
Frame = +2
Query: 14 RKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSST 193
R CHS V ++ +++ GG DG+ + + + W + + L +S+
Sbjct: 517 RGCHSLVVLNE----KLYAIGGFDGETMVSSVEIYEPRTGTWMTGEPMK---DLRGYSAV 569
Query: 194 VTSSGCMYIFGGIEPKEDANLEIIFCIKYGYVYQN 298
+Y+ GG + +ED L+ + C K G ++N
Sbjct: 570 AVVKDSIYVIGGYKGEEDDILDTVECFKEGEGWKN 604
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +2
Query: 59 QVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGIEP 238
++F GG +G F D+ LD +W +T+ F ++V +Y GG +
Sbjct: 434 KIFAIGGGNGMVSFSDVEMLDPDIGRWI---RTRSMGQERFAVASVEHKSSIYAVGGYDG 490
Query: 239 KEDAN 253
KE N
Sbjct: 491 KEYLN 495
>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
phosphoesterase family protein similar to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
PF00149: Calcineurin-like phosphoesterase
Length = 1006
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 74 GGSDGQAVFEDIWRLDIA--DLQW-TLMKKTQLPHPLYFHSSTVTSSGCMYIFGG 229
GG+DG+ D+W LD A +W L + + P P + +++ S G + + GG
Sbjct: 247 GGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGG 301
>At1g08420.1 68414.m00931 kelch repeat-containing protein /
serine/threonine phosphoesterase family protein contains
Pfam profiles: PF00149 calcineurin-like phosphoesterase,
PF01344 kelch motif
Length = 1018
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 74 GGSDGQAVFEDIWRLDIA--DLQW-TLMKKTQLPHPLYFHSSTVTSSGCMYIFGG 229
GG+DG+ D+W LD A +W L + + P P + +++ S G + + GG
Sbjct: 258 GGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGG 312
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTL-MKKTQLPHPLY 178
+P PR H+A + + + +F GG F+D+ LD+ ++W+ ++ P P
Sbjct: 343 SPSPRSDHAAA-VHAERFLLIF--GGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRA 399
Query: 179 FHSSTVTSSGCMYIFGGIEPKEDANLEII 265
H+ VT +I GG + K A+ ++
Sbjct: 400 GHAG-VTIGENWFIVGGGDNKSGASESVV 427
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYF 181
AP PR H+ V I G F+ GG D ++ + L+++ L W+++ Q PL
Sbjct: 394 APTPRAGHAGVTI----GENWFIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVPLAS 449
Query: 182 HS-STVTSS----GCMYIFGGIEPKEDANLEII 265
S V SS + FGG + + + ++
Sbjct: 450 EGLSLVVSSYNGEDVLVAFGGYNGRYNNEINLL 482
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTL-MKKTQLPHPLY 178
+P PR H+A + + + +F GG F+D+ LD+ ++W+ ++ P P
Sbjct: 342 SPSPRSDHAAA-VHAERFLLIF--GGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRA 398
Query: 179 FHSSTVTSSGCMYIFGGIEPKEDANLEII 265
H+ VT +I GG + K A+ ++
Sbjct: 399 GHAG-VTIGENWFIVGGGDNKSGASESVV 426
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +2
Query: 2 APLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYF 181
AP PR H+ V I G F+ GG D ++ + L+++ L W+++ Q PL
Sbjct: 393 APTPRAGHAGVTI----GENWFIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVPLAS 448
Query: 182 HS-STVTSS----GCMYIFGGIEPKEDANLEII 265
S V SS + FGG + + + ++
Sbjct: 449 EGLSLVVSSYNGEDVLVAFGGYNGRYNNEINLL 481
>At5g48180.1 68418.m05952 kelch repeat-containing protein contains
Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip
elongation aberrant protein 1 (Cell polarity protein
tea1) (SP:P87061) [Schizosaccharomyces pombe]
Length = 326
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 53 GVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFHSSTVTSSGCMYIFGGI 232
G ++V GG D + + + D +W L+ + P + S +Y+FGG+
Sbjct: 82 GSTIYVYGGRDDKRRYNGLHSYDTETNEWKLLAPVEEGLPGRSYHSMAGDDRKVYVFGGV 141
Query: 233 EPKEDAN 253
K N
Sbjct: 142 TAKGRVN 148
>At1g51550.1 68414.m05802 F-box family protein similar to F-box
ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
[Arabidopsis thaliana]
Length = 478
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAV-FEDIWRLDIADL----QWTLMKKTQLPH 169
P PR HSA I V V GG V D W L++++ W +++ QLP
Sbjct: 231 PPPRGAHSACCIAEKKMV---VHGGIGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPP 287
Query: 170 PLYFHSSTVTSSGCMYIFGG 229
P H+ T + +FGG
Sbjct: 288 PRSGHTLTCIRENQVVLFGG 307
Score = 27.5 bits (58), Expect = 9.4
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Frame = +2
Query: 5 PLPRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDI---ADLQW--TLMKKTQLPH 169
P PR H+ I N V +F G G V +D+W LDI + +W +P
Sbjct: 286 PPPRSGHTLTCIRE-NQVVLF-GGRGLGYDVLDDVWILDIQEPCEEKWIQIFYDFQDVPE 343
Query: 170 ----PLYFHSSTVTSSGCMYIFGG 229
P HS+T+ G + I+GG
Sbjct: 344 YASLPRVGHSATLVLGGRILIYGG 367
>At1g46912.1 68414.m05219 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain; similar to hypothetical protein GI:4589954 from
[Arabidopsis thaliana] contains weak hit to TIGRFAM
TIGR01640 : F-box protein interaction domain;
Length = 312
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 65 FVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFH 184
FV + + V + IW D +L WTL + L HPLY +
Sbjct: 232 FVLPYTASEEVKKSIWATDSGELVWTL--SSPLSHPLYVY 269
>At5g41040.2 68418.m04989 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 441
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 446 LSSIFDNYFQSGCNLFTKCNGTPVFSNVFL-STWSRLGWN 330
+ + D Y +S + F P S+ L +TWSRLG++
Sbjct: 346 IKMVTDGYMRSAIDYFEVTRARPSLSSTLLITTWSRLGFH 385
>At5g41040.1 68418.m04988 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 457
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 446 LSSIFDNYFQSGCNLFTKCNGTPVFSNVFL-STWSRLGWN 330
+ + D Y +S + F P S+ L +TWSRLG++
Sbjct: 362 IKMVTDGYMRSAIDYFEVTRARPSLSSTLLITTWSRLGFH 401
>At5g04420.1 68418.m00435 kelch repeat-containing protein low
similarity to rngB protein, Dictyostelium discoideum,
PIR:S68824; contains Pfam profile PF01344: Kelch motif
Length = 514
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +2
Query: 11 PRKCHSAVQIDSPNGVQVFVAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLYFH-- 184
PR H+ + ID ++ GG D + L+++ L W+ + HPL
Sbjct: 254 PRAGHAGITIDE----NWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASEGL 309
Query: 185 ---SSTVTSSGCMYIFGGIEPKEDANLEII 265
S++V + FGG K + ++ ++
Sbjct: 310 SVCSASVFGENILVAFGGYNGKYNNDIFVM 339
>At4g15290.1 68417.m02341 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880]
Length = 757
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 362 FLSTWSRLGWNEVSASQQISLSFGIH 285
+ ++W LGW S ++ I+ S GIH
Sbjct: 443 YQTSWGNLGWMYDSVAEDINTSVGIH 468
>At1g54360.2 68414.m06198 expressed protein
Length = 447
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 269 CIKYGYVYQNSVKFVGKH*LHSILI*TKLTEIHY 370
C ++G+VY N + V + LH+ L TK HY
Sbjct: 223 CKRFGHVYHNLLPRVTRSLLHTFLDPTKALPQHY 256
>At1g54360.1 68414.m06197 expressed protein
Length = 447
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 269 CIKYGYVYQNSVKFVGKH*LHSILI*TKLTEIHY 370
C ++G+VY N + V + LH+ L TK HY
Sbjct: 223 CKRFGHVYHNLLPRVTRSLLHTFLDPTKALPQHY 256
>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 352
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/37 (27%), Positives = 15/37 (40%)
Frame = +2
Query: 68 VAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLY 178
V G DG + +W D QWT +P ++
Sbjct: 124 VTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMF 160
>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 345
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/37 (27%), Positives = 15/37 (40%)
Frame = +2
Query: 68 VAGGSDGQAVFEDIWRLDIADLQWTLMKKTQLPHPLY 178
V G DG + +W D QWT +P ++
Sbjct: 117 VTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMF 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,933
Number of Sequences: 28952
Number of extensions: 327378
Number of successful extensions: 806
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -