Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30974
         (798 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A182 Cluster: Rap/Ran GTPase activating protei...    33   6.3  
UniRef50_P62706 Cluster: Fibrosin-1; n=3; Euarchontoglires|Rep: ...    33   8.3  

>UniRef50_UPI000049A182 Cluster: Rap/Ran GTPase activating protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: Rap/Ran GTPase
           activating protein - Entamoeba histolytica HM-1:IMSS
          Length = 642

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -1

Query: 360 GTRGTQGVLIPSVTNDTNEIVSDSMTNIENDPLNLECNTTSL*KTFKYAFISFRRMYVSN 181
           G R   GV++    N  N +   S  N+E + LN   NT    K   +  + F  +  +N
Sbjct: 32  GERDLVGVIVYEKQNKGNIVRVKS--NVEKNTLNPIWNTPVFLKDVVFGSVLFFEIIENN 89

Query: 180 *IFEHDFHPLQNVGLTRNLVYLLGPMTIP 94
            +     +P+QN+   + + Y+L P+  P
Sbjct: 90  KVIAKALYPVQNIPNNKRMTYVL-PLITP 117


>UniRef50_P62706 Cluster: Fibrosin-1; n=3; Euarchontoglires|Rep:
           Fibrosin-1 - Homo sapiens (Human)
          Length = 177

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 458 CVPRTIFKTNFKRNTP*VHVPPRGEAHPRA-SGGAGGRGV 574
           C+P+       K   P VH+PP+    PRA  GGA GRGV
Sbjct: 66  CLPKGSLSQRPKCPPP-VHLPPKSSCPPRAGGGGAQGRGV 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,219,887
Number of Sequences: 1657284
Number of extensions: 13692542
Number of successful extensions: 44243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44147
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)