Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30974
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.58 
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    29   0.77 
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    27   4.1  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   7.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   9.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.5  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
 Frame = -3

Query: 724 LSKSLFIKYI*LEPKSRMTRQYILFS*NNYVKYQIFENLLHEYILSALPLHPSSPRAPRR 545
           L K  FIK++ L  K+R    ++L    + V+ + + + L ++ + +  L P S +   +
Sbjct: 305 LPKDAFIKFVQLLSKNR---NWVLM--RDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYK 359

Query: 544 SGMSLSSRWYVNLWRVPLK-----ISFENSA-----RYAAALLCFWR 434
             +SL S W  ++WR  L       SF   A     +Y++A   FW+
Sbjct: 360 DILSLISVWQHSVWRPSLAYLQVVYSFSMRALLVNRQYSSAFAFFWK 406


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 375 FSSLLLTGNEFT-TVVRGHQQRQKHNKAAAYRALFSKLILRGTRHRFT 515
           + S L T   F  T  R     +K + AAAY+ALF KL L G +H+ T
Sbjct: 258 YLSYLWTSGPFRDTYTRFGYDPRKDSNAAAYQALFFKLKLNG-KHKGT 304


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 612 ICYTNTSSPHYHCTPRPPAPPDALG*ASPL 523
           I ++N+S+P    T RPP PP A G A+P+
Sbjct: 262 IAFSNSSTPTDQ-TLRPPNPPAANGNATPV 290


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 450 CCVSGVADVHG-RLS*TRFPSTTTKKSEFSHGTRGTQGVLIPSVTNDTNEIVSDSMTNIE 274
           C  S  AD  G  +   +   T T  S     T G+Q   +P + N  N ++     N+E
Sbjct: 3   CMSSKYADTSGGEVIQKKLSDTQTSNSS----TTGSQNARVPVLENWLNIVLRGKPQNVE 58

Query: 273 NDPLNLECNTTS 238
           +  + ++ N+TS
Sbjct: 59  SSGVRVKGNSTS 70


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 387 TTKKSEFSHGTRGTQGVLIPSVTNDTNEIVSDS 289
           TT + + +H T    G+L+ S   D    V DS
Sbjct: 485 TTTQKDINHATISNSGILVTSSGTDNQTFVWDS 517


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 405 TRFPSTTTKKSEFSHGTRGTQ-GVLIPSVTNDTNEIVSDSMTNIEN 271
           T FPS+ T    F HG+ G      +PS +   N    D  ++  N
Sbjct: 297 TLFPSSATNSFSFEHGSAGFPIPGSVPSTSYHANTASEDGFSSSYN 342


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 242 VVLHSRFRGSFSMLVMLSETISFVSFVTLGIKTPCVPLVPCENSL 376
           ++LHSRF       V +S   S +  V  G+ + C+  +  E+SL
Sbjct: 670 ILLHSRFHSRVLGGVTVSFQCSPIYRVNYGLSSDCIYSINSESSL 714


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 587 RITTAPLVPPRPPTLWDEPLLSV 519
           RI ++P+V P P T + EPL  +
Sbjct: 488 RIQSSPIVAPTPDTSFREPLSEI 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,395
Number of Sequences: 5004
Number of extensions: 59891
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)