BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30974 (798 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_01_0749 + 5599238-5600128 32 0.61 02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524... 29 3.2 04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 5.7 01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 29 5.7 01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 5.7 01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 7.5 04_04_0262 - 24024451-24025080,24025421-24026320 28 9.9 04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 28 9.9 01_01_0842 - 6571432-6571487,6571586-6571675,6571967-6572274,657... 28 9.9 01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 9.9 >06_01_0749 + 5599238-5600128 Length = 296 Score = 31.9 bits (69), Expect = 0.61 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -3 Query: 589 SALPLHPSSPRAPRRSGMS 533 +ALPLHPSSPR+ +RS S Sbjct: 20 AALPLHPSSPRSKKRSSSS 38 >02_05_0668 + 30749474-30750007,30750818-30751403,30751405-30752497, 30753105-30753255,30754055-30754870 Length = 1059 Score = 29.5 bits (63), Expect = 3.2 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 121 YQISS*SDVLKGVKIMFKDSVTNIHTSEANKSVFKCLL 234 Y++ SD+ G + +F D + I ++ AN+ KC L Sbjct: 515 YEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNL 552 >04_04_0583 - 26375850-26375971,26376070-26376139,26376227-26376309, 26376452-26376629,26377390-26377851 Length = 304 Score = 28.7 bits (61), Expect = 5.7 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 682 KSRMTRQYILFS*N-NYVKYQIFENLLHEYILSALPLHPSSPRA 554 K + R+Y + S N N V + + LLH + SAL +H SP A Sbjct: 44 KDLLFREYSVSSRNGNRVAFAVDVALLHRALRSALAVHAQSPAA 87 >01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375, 39586479-39586640,39586753-39586877,39586992-39587030, 39587290-39587476,39587643-39587713,39589371-39589564, 39589656-39589767,39589899-39590082,39590177-39590503, 39590780-39591061,39591148-39591621,39591730-39591813, 39591850-39591939,39592024-39592247,39592503-39592600, 39592679-39593169,39593249-39593520,39594266-39594522, 39594672-39594890,39595007-39595167,39595249-39595441, 39595528-39595633,39595947-39596121,39596404-39596556, 39596663-39596794,39597120-39597184,39597754-39597819, 39598433-39598511,39598587-39598767,39598864-39598976 Length = 1889 Score = 28.7 bits (61), Expect = 5.7 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 669 LDNTSYLVKIIMLSIKYSRICYTNTSSPHYHCTPRPPAPPDA 544 L N S+L+K+I + I+ ++ S+ P PPAP A Sbjct: 1806 LANFSHLLKVIRILIQQRKMARRRQSANQIRRLPNPPAPMPA 1847 >01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343, 32237909-32239263,32240399-32240460,32240544-32241144, 32241229-32241310,32241778-32241840 Length = 1111 Score = 28.7 bits (61), Expect = 5.7 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = +2 Query: 341 PCVPLVPCENSLFFVVVDGKRVYDSRPWTSATPETQQSRCVPRTIFKTNFKRNTP 505 P +P P + S V G PW + TP S PR + ++F+ N P Sbjct: 886 PVIPPPPIQTSFVRPVYPGP----GSPWENTTPNPSFSHASPRMMPGSSFRMNPP 936 >01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593, 7039698-7039768,7040148-7040224,7040380-7040527, 7040973-7041134,7041374-7041694 Length = 597 Score = 28.3 bits (60), Expect = 7.5 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = -1 Query: 642 IIMLSIKYSRICYTNTSSPHYHCTPRPPAPPDAL 541 +++L + +C H+H P PP PP L Sbjct: 87 VVLLLVTILLVCLFKKKKRHHHHHPPPPPPPHLL 120 >04_04_0262 - 24024451-24025080,24025421-24026320 Length = 509 Score = 27.9 bits (59), Expect = 9.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +1 Query: 367 ELTFLRCC*RETSLRQSSVDISNARNTTKPLRTAH 471 EL +LR +ET + + R TT+P RTAH Sbjct: 352 ELHYLRLVIKETLRLHPAAPLLVPRETTEPFRTAH 386 >04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 Length = 213 Score = 27.9 bits (59), Expect = 9.9 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = -1 Query: 609 CYTNTSSPHYHCTPRPPAPP 550 C ++ YHC P PP PP Sbjct: 110 CCPPSTQQCYHCCPEPPPPP 129 >01_01_0842 - 6571432-6571487,6571586-6571675,6571967-6572274, 6572872-6573037,6573659-6573841,6574321-6574426, 6574537-6574701,6575202-6575262,6577147-6577208 Length = 398 Score = 27.9 bits (59), Expect = 9.9 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 622 IFENLL-HEYILSALPLHPSSPRAPRRSGM 536 +F +LL H+Y L P P+ P AP ++GM Sbjct: 159 LFNHLLQHQYNLMKYPAPPNVPLAPMQNGM 188 >01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 Length = 855 Score = 27.9 bits (59), Expect = 9.9 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 510 FTYHREERLIPERRGARGDEGC-SGNAERM 596 FT+ R R++ E G+R D C S NAE + Sbjct: 751 FTFTRPRRIVEEASGSRRDAACPSRNAENV 780 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,970,072 Number of Sequences: 37544 Number of extensions: 396309 Number of successful extensions: 1742 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1732 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2162420256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -