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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30974
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0749 + 5599238-5600128                                           32   0.61 
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    29   3.2  
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763...    29   5.7  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    29   5.7  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    29   5.7  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    28   7.5  
04_04_0262 - 24024451-24025080,24025421-24026320                       28   9.9  
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888     28   9.9  
01_01_0842 - 6571432-6571487,6571586-6571675,6571967-6572274,657...    28   9.9  
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146           28   9.9  

>06_01_0749 + 5599238-5600128
          Length = 296

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -3

Query: 589 SALPLHPSSPRAPRRSGMS 533
           +ALPLHPSSPR+ +RS  S
Sbjct: 20  AALPLHPSSPRSKKRSSSS 38


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 121 YQISS*SDVLKGVKIMFKDSVTNIHTSEANKSVFKCLL 234
           Y++   SD+  G + +F D +  I ++ AN+   KC L
Sbjct: 515 YEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNL 552


>04_04_0583 -
           26375850-26375971,26376070-26376139,26376227-26376309,
           26376452-26376629,26377390-26377851
          Length = 304

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 682 KSRMTRQYILFS*N-NYVKYQIFENLLHEYILSALPLHPSSPRA 554
           K  + R+Y + S N N V + +   LLH  + SAL +H  SP A
Sbjct: 44  KDLLFREYSVSSRNGNRVAFAVDVALLHRALRSALAVHAQSPAA 87


>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
            39586479-39586640,39586753-39586877,39586992-39587030,
            39587290-39587476,39587643-39587713,39589371-39589564,
            39589656-39589767,39589899-39590082,39590177-39590503,
            39590780-39591061,39591148-39591621,39591730-39591813,
            39591850-39591939,39592024-39592247,39592503-39592600,
            39592679-39593169,39593249-39593520,39594266-39594522,
            39594672-39594890,39595007-39595167,39595249-39595441,
            39595528-39595633,39595947-39596121,39596404-39596556,
            39596663-39596794,39597120-39597184,39597754-39597819,
            39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 669  LDNTSYLVKIIMLSIKYSRICYTNTSSPHYHCTPRPPAPPDA 544
            L N S+L+K+I + I+  ++     S+      P PPAP  A
Sbjct: 1806 LANFSHLLKVIRILIQQRKMARRRQSANQIRRLPNPPAPMPA 1847


>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
            32237909-32239263,32240399-32240460,32240544-32241144,
            32241229-32241310,32241778-32241840
          Length = 1111

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 341  PCVPLVPCENSLFFVVVDGKRVYDSRPWTSATPETQQSRCVPRTIFKTNFKRNTP 505
            P +P  P + S    V  G       PW + TP    S   PR +  ++F+ N P
Sbjct: 886  PVIPPPPIQTSFVRPVYPGP----GSPWENTTPNPSFSHASPRMMPGSSFRMNPP 936


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 642 IIMLSIKYSRICYTNTSSPHYHCTPRPPAPPDAL 541
           +++L +    +C       H+H  P PP PP  L
Sbjct: 87  VVLLLVTILLVCLFKKKKRHHHHHPPPPPPPHLL 120


>04_04_0262 - 24024451-24025080,24025421-24026320
          Length = 509

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 367 ELTFLRCC*RETSLRQSSVDISNARNTTKPLRTAH 471
           EL +LR   +ET     +  +   R TT+P RTAH
Sbjct: 352 ELHYLRLVIKETLRLHPAAPLLVPRETTEPFRTAH 386


>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
          Length = 213

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 609 CYTNTSSPHYHCTPRPPAPP 550
           C   ++   YHC P PP PP
Sbjct: 110 CCPPSTQQCYHCCPEPPPPP 129


>01_01_0842 -
           6571432-6571487,6571586-6571675,6571967-6572274,
           6572872-6573037,6573659-6573841,6574321-6574426,
           6574537-6574701,6575202-6575262,6577147-6577208
          Length = 398

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 622 IFENLL-HEYILSALPLHPSSPRAPRRSGM 536
           +F +LL H+Y L   P  P+ P AP ++GM
Sbjct: 159 LFNHLLQHQYNLMKYPAPPNVPLAPMQNGM 188


>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
          Length = 855

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 510 FTYHREERLIPERRGARGDEGC-SGNAERM 596
           FT+ R  R++ E  G+R D  C S NAE +
Sbjct: 751 FTFTRPRRIVEEASGSRRDAACPSRNAENV 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,072
Number of Sequences: 37544
Number of extensions: 396309
Number of successful extensions: 1742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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