Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30974
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0749 + 5599238-5600128 32 0.61
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524... 29 3.2
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 5.7
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 29 5.7
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 5.7
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 7.5
04_04_0262 - 24024451-24025080,24025421-24026320 28 9.9
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 28 9.9
01_01_0842 - 6571432-6571487,6571586-6571675,6571967-6572274,657... 28 9.9
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 9.9
>06_01_0749 + 5599238-5600128
Length = 296
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 589 SALPLHPSSPRAPRRSGMS 533
+ALPLHPSSPR+ +RS S
Sbjct: 20 AALPLHPSSPRSKKRSSSS 38
>02_05_0668 +
30749474-30750007,30750818-30751403,30751405-30752497,
30753105-30753255,30754055-30754870
Length = 1059
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 121 YQISS*SDVLKGVKIMFKDSVTNIHTSEANKSVFKCLL 234
Y++ SD+ G + +F D + I ++ AN+ KC L
Sbjct: 515 YEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNL 552
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 682 KSRMTRQYILFS*N-NYVKYQIFENLLHEYILSALPLHPSSPRA 554
K + R+Y + S N N V + + LLH + SAL +H SP A
Sbjct: 44 KDLLFREYSVSSRNGNRVAFAVDVALLHRALRSALAVHAQSPAA 87
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 669 LDNTSYLVKIIMLSIKYSRICYTNTSSPHYHCTPRPPAPPDA 544
L N S+L+K+I + I+ ++ S+ P PPAP A
Sbjct: 1806 LANFSHLLKVIRILIQQRKMARRRQSANQIRRLPNPPAPMPA 1847
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 341 PCVPLVPCENSLFFVVVDGKRVYDSRPWTSATPETQQSRCVPRTIFKTNFKRNTP 505
P +P P + S V G PW + TP S PR + ++F+ N P
Sbjct: 886 PVIPPPPIQTSFVRPVYPGP----GSPWENTTPNPSFSHASPRMMPGSSFRMNPP 936
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -1
Query: 642 IIMLSIKYSRICYTNTSSPHYHCTPRPPAPPDAL 541
+++L + +C H+H P PP PP L
Sbjct: 87 VVLLLVTILLVCLFKKKKRHHHHHPPPPPPPHLL 120
>04_04_0262 - 24024451-24025080,24025421-24026320
Length = 509
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 367 ELTFLRCC*RETSLRQSSVDISNARNTTKPLRTAH 471
EL +LR +ET + + R TT+P RTAH
Sbjct: 352 ELHYLRLVIKETLRLHPAAPLLVPRETTEPFRTAH 386
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 609 CYTNTSSPHYHCTPRPPAPP 550
C ++ YHC P PP PP
Sbjct: 110 CCPPSTQQCYHCCPEPPPPP 129
>01_01_0842 -
6571432-6571487,6571586-6571675,6571967-6572274,
6572872-6573037,6573659-6573841,6574321-6574426,
6574537-6574701,6575202-6575262,6577147-6577208
Length = 398
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 622 IFENLL-HEYILSALPLHPSSPRAPRRSGM 536
+F +LL H+Y L P P+ P AP ++GM
Sbjct: 159 LFNHLLQHQYNLMKYPAPPNVPLAPMQNGM 188
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 510 FTYHREERLIPERRGARGDEGC-SGNAERM 596
FT+ R R++ E G+R D C S NAE +
Sbjct: 751 FTFTRPRRIVEEASGSRRDAACPSRNAENV 780
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,072
Number of Sequences: 37544
Number of extensions: 396309
Number of successful extensions: 1742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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