Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30974
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_48078| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   30   2.5  
SB_5022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_14760| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   29   4.4  
SB_1019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 413  SRPWTSATPETQQSRCVPRT---IFKTNFKRNTP*VHVPPRGEAHPRA 547
            S+P + + P+ QQ+R  PRT    F  N   + P   +PP   +H  A
Sbjct: 1183 SKPLSGSPPKIQQARLTPRTPSSAFSQNHSTSYPAFKLPPANSSHQAA 1230


>SB_48078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 620 IREFVTRIHPLRITTAPLVPPRPPTLWDEPLLSVVREP 507
           IR+F   + PL + +APL+   P    DE L S ++EP
Sbjct: 43  IRDFRDFLQPLALNSAPLISGNPSNERDEALHSDLQEP 80


>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 620 IREFVTRIHPLRITTAPLVPPRPPTLWDEPLLSVVREPM 504
           IR+F   + PL + +APL+        DE L S ++EP+
Sbjct: 43  IRDFRDSLQPLALNSAPLISDNSSDERDEALHSDIQEPL 81


>SB_5022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 620 IREFVTRIHPLRITTAPLVPPRPPTLWDEPLLSVVREPM 504
           IR+F   + PL + +APL+        DE L S ++EP+
Sbjct: 165 IRDFRDSLQPLALNSAPLISDNSSDERDESLHSDIQEPL 203


>SB_14760| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 104

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 620 IREFVTRIHPLRITTAPLVPPRPPTLWDEPLLSVVREPM 504
           IR+F   + PL + +APL+        DE L S ++EP+
Sbjct: 14  IRDFRDSLQPLALNSAPLISDNFSDQRDEALHSDIQEPL 52


>SB_1019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 222 KYAFISFRRMYVSN*IFEHDF--HPLQNVGLTRNL 124
           + AF   RR+Y  N +FE +F   PL+N G T  L
Sbjct: 75  RLAFRRVRRVYEGNFLFEEEFGGSPLKNQGFTDTL 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,787,464
Number of Sequences: 59808
Number of extensions: 434148
Number of successful extensions: 1394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)