Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30974
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or ad...    30   1.7  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    30   1.7  
U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AF016671-6|AAK73904.1|  979|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform b protein.
          Length = 979

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 605 TRIHPLRITTAPLVPPRPPTLWDEPLLSVVREP 507
           TR++P +    PLVP RPPT ++  L++  +EP
Sbjct: 597 TRVYPSQQKQGPLVP-RPPTTFEPRLVAQQQEP 628


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 605 TRIHPLRITTAPLVPPRPPTLWDEPLLSVVREP 507
           TR++P +    PLVP RPPT ++  L++  +EP
Sbjct: 869 TRVYPSQQKQGPLVP-RPPTTFEPRLVAQQQEP 900


>U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical
           protein B0207.2 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 640 NYVKYQIFENLLHEYILSALPLHPSSPRAPRRSGM 536
           N + Y  F  LLH+Y+    P+HP    +P+ +G+
Sbjct: 39  NPMWYTNFCLLLHDYMQEMYPVHPDGTSSPKMTGL 73


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 353 LVPCENSLFF--VVVDGKRVYDSRPWTSATPETQQSRCVPRTIFKTN 487
           L P E   +     V  +  Y+   W SA   T + R VPR +F+ N
Sbjct: 87  LTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFN 133


>Z69904-1|CAA93777.1|  420|Caenorhabditis elegans Hypothetical
           protein ZK20.1 protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 631 KYQIF-ENLLHEYILSALPLHPSSPRA 554
           ++++F ENLL+ YI  +LP+H  SP A
Sbjct: 362 EHKLFMENLLNTYIQGSLPVHLRSPLA 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,346,710
Number of Sequences: 27780
Number of extensions: 334313
Number of successful extensions: 1155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)