Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30974
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67040.1 68414.m07624 expressed protein ; expression supporte...    29   2.7  
At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein si...    29   4.7  
At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein si...    29   4.7  
At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein si...    29   4.7  
At5g57345.1 68418.m07164 expressed protein                             28   8.3  
At1g02110.1 68414.m00137 proline-rich family protein contains pr...    28   8.3  

>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
 Frame = +3

Query: 399 NEFTTV-VRGHQQRQKHNKAAAYRALFS-KLILRGTRHRFTYH-----REERLIPERR-- 551
           NE ++V V G     +  K A +RA F  ++ L G R+R  YH     REER  PE R  
Sbjct: 316 NEDSSVSVSGKDSTDQMVKKALHRAQFKDEMSLPGYRNRSEYHKKVLHREERFPPEARSF 375

Query: 552 GARGDEGCSGNAERMYSCNK 611
                  CS  A  + S  K
Sbjct: 376 ALPSKRSCSSPANAINSKEK 395


>At3g13560.3 68416.m01706 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -1

Query: 555 PPDALG*ASPLGG 517
           PPDALG ASPLGG
Sbjct: 460 PPDALGPASPLGG 472


>At3g13560.2 68416.m01705 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -1

Query: 555 PPDALG*ASPLGG 517
           PPDALG ASPLGG
Sbjct: 460 PPDALGPASPLGG 472


>At3g13560.1 68416.m01704 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -1

Query: 555 PPDALG*ASPLGG 517
           PPDALG ASPLGG
Sbjct: 460 PPDALGPASPLGG 472


>At5g57345.1 68418.m07164 expressed protein
          Length = 188

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 216 AFISFRRMYVSN*I-FEHDFHPLQNVGLTR 130
           A  S R+ ++SN   F+H F P  NV LTR
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLTR 34


>At1g02110.1 68414.m00137 proline-rich family protein contains
           proline-rich domain, INTERPRO:IPR000694
          Length = 679

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 607 LHEYI-LSALPLHPSSPRAPRRSGMSLSSRWYVNLWRVPLKISFE 476
           LH +  LS +PL    P+  R    +L   W  +L RVP  ++ E
Sbjct: 497 LHAWFKLSLVPLSNGDPKKQRPDSFALCEEWKQSLERVPDTVASE 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,076
Number of Sequences: 28952
Number of extensions: 306743
Number of successful extensions: 934
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)