Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30972
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   1.6  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.9  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   5.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.0  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   8.8  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 431 SIFVYKLFSISCKLTPSIIDV 493
           SIFVY +F+ISC L  +I+ +
Sbjct: 153 SIFVYTVFNISCALPRNIVQM 173


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 448 TIFHQLQAYTIHYRCA 495
           TI H L  YT+H++C+
Sbjct: 18  TIIHALPTYTVHWKCS 33


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 364 YLRSQCLRTFRLSPNSPAG-TPQSPTPLPR-LLVIVRERPSPLYVLKHLR*RQHFLLLPG 191
           Y RSQ   +  L P+ P+G +P    P  R +   +++      +LK+++ R++ L+L G
Sbjct: 567 YTRSQAFHSTSLPPSLPSGHSPSIAIPSKRSVSATIKDESKTFELLKNIQ-RKYELILSG 625


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 1   RSFNVQNANLTFVLLAAILGTALAVGQYYVPRS 99
           R+F+   A+  F+ L   +G  L  G Y  PR+
Sbjct: 79  RAFHANGASFFFIFLYLHIGRGLYYGSYKYPRT 111


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 432  LIFNRRKYVASRHHVF 385
            L+FN R Y++ R HVF
Sbjct: 1151 LLFNHRSYMSGRFHVF 1166


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 166 LNPYPYSYNQGAEGSADVSGGALTRTKAK 252
           +NP P     G+ GSA ++G  L    AK
Sbjct: 89  INPIPLGRGMGSSGSAAIAGVMLANEIAK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,216
Number of Sequences: 5004
Number of extensions: 51274
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)