Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30972
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160...    30   1.7  
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    29   3.9  
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323...    29   3.9  
12_01_0422 - 3325205-3325317,3325495-3325591,3325945-3326090,332...    27   9.0  
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119           27   9.0  
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207...    27   9.0  
02_05_1351 - 35855543-35856751                                         27   9.0  

>02_04_0567 -
           23914330-23914461,23915016-23915136,23915954-23916048,
           23916131-23916301,23917291-23917380,23917636-23918139
          Length = 370

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 379 FNLPIYLRS-QCLRTFRLSPNSPAGTPQSPTPLP 281
           FNLP +LRS +C  TF   P  P   P  P P P
Sbjct: 20  FNLPPWLRSLRCPFTFLCPPPPPPPPPPPPPPPP 53


>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 370 PIYLRSQCLRTFRLSPNSPAGTPQSPTPLPR 278
           P +LR   LR  R +  SPA  P  P+P PR
Sbjct: 10  PTFLREVELRLLRCTLPSPATLPPPPSPPPR 40


>06_03_0243 +
           18629793-18630047,18630362-18630442,18631911-18632305,
           18632471-18632926,18633156-18633247,18633528-18633683,
           18635657-18636057
          Length = 611

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 415 EVCSQPSPCFL--LFNLPIYLRSQCLRTFRLSPNSPAGTPQSPTPLP 281
           +V  +P  C L  L+    + RS+C R   LSP     +P+SP+ LP
Sbjct: 158 DVVLRPLRCRLHALWRCFFHWRSRCCRHRGLSPPPSRSSPRSPSSLP 204


>12_01_0422 -
           3325205-3325317,3325495-3325591,3325945-3326090,
           3326188-3326227,3326543-3326595,3326687-3326760,
           3326868-3326950,3327096-3327164,3327281-3327628
          Length = 340

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 53  SLEPLSQWDNITCRVPTTRSTPMGMSHNRYLCGD*GGRLTLT--PIRTTREQKEVLTSAE 226
           S E  S  + +   +   R++P    HN       G   T +  P+RT REQK+ L   E
Sbjct: 226 SSERSSNNNGVESMIEKRRTSPAPTYHNNKQNNSIGYSTTSSSAPVRTVREQKDNLMDLE 285

Query: 227 VL*HVQRR 250
            L   ++R
Sbjct: 286 KLDSARKR 293


>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
          Length = 393

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 397 SPCFLLFNLPIYLRSQCLRTF 335
           +PC  + N P YLR +CL  F
Sbjct: 127 APCLSICNTPQYLRKRCLLNF 147


>03_02_0644 +
           10118790-10119559,10120252-10120432,10120526-10120725,
           10120834-10120992,10122375-10122741
          Length = 558

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 181 YSYNQGAEGSADVSGGA-LTRTKAKAVPVL*QEAGAAVLAIGVCPPENSEII 333
           + YN+  +  AD   GA   R K+  + VL +  GAA LA G       E+I
Sbjct: 49  FLYNEDIKSIADFPFGAGALRAKSPDLHVLQETVGAAHLAAGSIAKRGEEVI 100


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -2

Query: 337 FRLSPNSPAGTPQSP---TPLPRLLVIVRERPSP 245
           F  SPN P  +P  P   TPLPR+       PSP
Sbjct: 168 FTRSPNPPPPSPSPPIPATPLPRVHPSSSSSPSP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,287,330
Number of Sequences: 37544
Number of extensions: 359737
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)