Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30972
         (617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           27   0.64 
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   2.0  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   4.5  
AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    23   7.9  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    23   7.9  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 26.6 bits (56), Expect = 0.64
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 352  QCLRTFRLSPNSPAGTPQSPTPLPRLLVIVRERP 251
            Q L+  ++ PN  A + QSP P+ R  V+  + P
Sbjct: 1560 QKLKRGKIEPNGVASSSQSPAPVRREFVMHNKAP 1593


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 7    FNVQNANLTFVLLAAILGTALAVGQYY 87
            FNV    L F L+ AI+G  L  G+Y+
Sbjct: 1435 FNVLLVCLIFWLIFAIMGVQLFAGKYF 1461


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 313  AGTPQSPTPLPRLLVIVRERPSPLYVL 233
            +G  +S   L  +L +++ +P+PLY+L
Sbjct: 1084 SGGQRSLVALSLILAMLKYKPAPLYIL 1110


>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 397 SPCFLLFNLPIYLRSQCLRTFR 332
           SP  L  +LP   R +C +TFR
Sbjct: 306 SPIKLKLSLPYVEREKCSKTFR 327


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 328 SPNSPAGTPQSPTPLPR 278
           S +  A TP +PTP PR
Sbjct: 76  SSHRAAATPTTPTPQPR 92


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,854
Number of Sequences: 2352
Number of extensions: 12690
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)