Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30972
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    29   3.5  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    28   4.6  
U80447-9|AAB37813.1|  230|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 124 HESQPVPLRRLRRSLNPYPYSYNQGAEGSADVSGGAL 234
           HE  P P R+LR SLN    +  +  EGSAD   G++
Sbjct: 833 HEHVPHPRRKLRSSLNRI-LALGRRQEGSADSGRGSI 868


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 124 HESQPVPLRRLRRSLNPYPYSYNQGAEGSADVSGGAL 234
           HE  P P R+LR SLN    +  +  EGSAD   G++
Sbjct: 833 HEHVPHPRRKLRSSLNRI-LALGRRQEGSADSGRGSI 868


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 418 KEVCSQPSPCFLLFNLPIYLRSQCLRTFRLSPNSPAGTPQSPTPLPRLLVIVRERPSPL 242
           K V  QP    +L +LP    +Q L    L P +P   P++P P+ + +      P+PL
Sbjct: 247 KNVAEQPP--LVLQSLPETPEAQKLPEEPLEPVTPEPIPEAPVPIAQYIQEPTTTPAPL 303


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 418 KEVCSQPSPCFLLFNLPIYLRSQCLRTFRLSPNSPAGTPQSPTPLPRLLVIVRERPSPL 242
           K V  QP    +L +LP    +Q L    L P +P   P++P P+ + +      P+PL
Sbjct: 247 KNVAEQPP--LVLQSLPETPEAQKLPEEPLEPVTPEPIPEAPVPIAQYIQEPTTTPAPL 303


>U80447-9|AAB37813.1|  230|Caenorhabditis elegans Hypothetical
           protein F55F8.8 protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 331 LSPNSPAGTPQSPTPLPRLLVIVRERPSP 245
           +S  SP   P  P PLP   VI+R  P P
Sbjct: 74  VSIESPIPAPIPPPPLPGQQVIIRPAPPP 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,647
Number of Sequences: 27780
Number of extensions: 301904
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)