Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30972
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.5  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 169 NPYPYSYNQGAEGSADVSGGAL 234
           NPYP +   G +G     GG L
Sbjct: 361 NPYPLNTTNGRKGLLKGGGGYL 382


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +2

Query: 398 RLATYFL--LLKMSIFVYKLFSISCKLTPSIIDVHRC 502
           R   +FL  +L  S FV    SI C     +I  H C
Sbjct: 6   RCTFFFLSVILITSYFVTPTMSIKCNCKRHVIKPHIC 42


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 416 LLLKMSIFVYKLFSISCKLTPSIIDVH 496
           LL K  IF   L SIS  +T  +++VH
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLNVH 332


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 416 LLLKMSIFVYKLFSISCKLTPSIIDVH 496
           LL K  IF   L SIS  +T  +++VH
Sbjct: 306 LLGKYLIFAMILVSISICVTVVVLNVH 332


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  NITCRVPTTRSTPMGMSHN 136
           N+  ++P T+ T MG+ +N
Sbjct: 154 NVGYKIPITKLTAMGVLNN 172


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  NITCRVPTTRSTPMGMSHN 136
           N+  ++P T+ T MG+ +N
Sbjct: 154 NVGYKIPITKLTAMGVLNN 172


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  NITCRVPTTRSTPMGMSHN 136
           N+  ++P T+ T MG+ +N
Sbjct: 154 NVGYKIPITKLTAMGVLNN 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,801
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)