Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30968
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 62 4e-10
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 35 0.081
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 30 2.3
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 29 3.1
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 5.3
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 9.3
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +3
Query: 255 IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 434
IV RL E F DKK + ++K Y+K L AKL+ ++ E FK N+ K +LG+
Sbjct: 70 IVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKL 125
Query: 435 KELQFFTGESMDCDGMVAMMEYRD 506
K+LQFF GESM DG + Y+D
Sbjct: 126 KDLQFFVGESMHDDGGLVFAYYKD 149
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +1
Query: 55 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 225
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 226 TD 231
D
Sbjct: 60 VD 61
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 34.7 bits (76), Expect = 0.081
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = -1
Query: 587 ISYLTFRISLLLDH-V*KTS*LVFAYHQVSIFHHGNHAITIHGLPSKEL----KFLKPAE 423
IS+LT +++ L++ + + H+ FHH H ++ PSK+L ++L+
Sbjct: 214 ISFLTDKVAQSLENFIQYHPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR 273
Query: 422 DVFHYFVHVCFKYFNLVRRL 363
FH F ++C++Y + R+L
Sbjct: 274 -YFHSFANICYRYLKIGRKL 292
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 294 GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 467
G +K TL L++Y+ +V A L+ +Q+E FK +NKV K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194
Query: 468 D 470
+
Sbjct: 1195 E 1195
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 369 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLACGSGLFNS 247
APS + + SYSL GT + RR +F LA +F S
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLATSMIMFFS 727
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 267 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 446
H L+ A D S +L ++++ V +E+A Q+EV K + K+I EL
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236
Query: 447 FFTGE 461
+ E
Sbjct: 237 VLSKE 241
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 160 TRAQGDIQIEGFNPSAEEADEGTDSAVES 246
TR+ +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,991,776
Number of Sequences: 37544
Number of extensions: 398359
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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