Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30968
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 655 ILAGTGFSHHKGWNNFWYFKKIYLPLPTI 741
           +  GTG++ H+G   F YF + Y   P +
Sbjct: 174 VFNGTGWTFHEGRKQF-YFHQFYKQQPDL 201


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 457 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 359
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 457 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 359
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 119 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 15
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -3

Query: 750 NYFNGW*WQVYFFKIPKIVPALVMREASSCQDAGH 646
           N  N W W +    +     +L+     +CQ+A H
Sbjct: 361 NEMNKWWWNMKISNLSFDKQSLLKENTVTCQEAMH 395


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 709 NTKNCSSPCDERS 671
           NTKNC +P D  S
Sbjct: 106 NTKNCVNPYDRDS 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,869
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)