Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30967
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    32   0.056
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    27   1.6  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   6.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   8.5  

>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 32.3 bits (70), Expect = 0.056
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 152 NQEQVINPDGSYKWSYETGNGISAEEQGYIKNQ 250
           ++E+  NPD  ++W Y     I  + + Y KNQ
Sbjct: 79  DEEEEENPDAEFRWGYSARRRIRKQREEYFKNQ 111


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 122 VHN---TEPIPILNQEQVINPDGSYKWSYETGNGISAE 226
           VHN    EP+P  N  +V       KW   +G+ I++E
Sbjct: 217 VHNEVMAEPLPHSNNREVTQATNQPKWQIHSGSDIASE 254


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 181 SIGIDDLFLIKYGNRFGIMD 122
           S G+ D FL+KYG+   I D
Sbjct: 77  SQGLKDTFLVKYGDLINIQD 96


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 138  LFPYLIRNRSSIPMDHISGVTRQ 206
            ++P+ +R R+ +  DHISG +++
Sbjct: 1407 IYPWQLRPRNGMHPDHISGFSKE 1429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,704
Number of Sequences: 5004
Number of extensions: 34823
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)