Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30967
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    34   0.090
Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +2

Query: 11  SSFQQFQHQPNYLQQVQPINSLYAKXXXXXXXXXXXTVHNTEPIPILNQEQVINPDGSYK 190
           S  +QF H+P ++++  P+ + YA            T  +++P P + Q   I P  +  
Sbjct: 177 SVHEQFNHRPAHVEEEIPLENHYAPPPHQQIPDDLNTSFSSQPPPPIEQFGAIPPPNATI 236

Query: 191 WSYETGNGISAEEQGY 238
            S+ T N  S   Q +
Sbjct: 237 PSFPTSNAASPPVQEF 252


>Z47074-1|CAA87375.2|  851|Caenorhabditis elegans Hypothetical
           protein K07C10.1 protein.
          Length = 851

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 217 NSISCLVTPLI*SIGIDDLFLI 152
           NSI C+   LI  IG+DD FL+
Sbjct: 320 NSIMCITPFLILGIGVDDAFLL 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,651
Number of Sequences: 27780
Number of extensions: 199417
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)