Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30967
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48630.1 68416.m05309 hypothetical protein hypothetical prote...    28   4.1  
At5g28310.1 68418.m03437 oxidoreductase-related low similarity t...    27   9.6  

>At3g48630.1 68416.m05309 hypothetical protein hypothetical protein
           - Arabidopsis thaliana,  EMBL:AC006438.2
          Length = 122

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 290 YWPCAVCASCSGFPGFLC 237
           YW   VCASC G   F+C
Sbjct: 32  YWKRDVCASCKGNQNFVC 49


>At5g28310.1 68418.m03437 oxidoreductase-related low similarity to
           glyoxylate reductase from Thermococcus litoralis
           [gi:13515409]
          Length = 233

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 415 NRSRKIITSNKKILKVQRSIQINTAKLR*DNNLLDRQAQYIDIGPVPSAPLVQVSL 248
           NR +++    +K  + +R +Q N  +   DN  L      +++ P P+  L Q SL
Sbjct: 10  NRIKRVYRETRKEQRFERQMQQNRGQTGVDNQDLKSNIVVVEVSPSPT--LAQASL 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,604,655
Number of Sequences: 28952
Number of extensions: 178597
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)