Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30966
(454 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 84 2e-15
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 81 8e-15
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 65 8e-10
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 62 4e-09
UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein NCU095... 59 4e-08
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 56 5e-07
UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1; Bab... 55 6e-07
UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria pa... 55 8e-07
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 52 6e-06
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 51 1e-05
UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, wh... 50 2e-05
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 50 2e-05
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 48 7e-05
UniRef50_Q2H770 Cluster: Predicted protein; n=1; Chaetomium glob... 47 2e-04
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 44 0.001
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 37 0.18
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 36 0.31
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 36 0.41
UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Re... 35 0.71
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 35 0.94
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 34 1.6
UniRef50_Q5V3W7 Cluster: SnRNP-like protein; n=2; Halobacteriace... 33 2.9
UniRef50_Q9NDI5 Cluster: Epiplasmin C; n=1; Tetrahymena pyriform... 32 5.0
UniRef50_Q179A8 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 32 5.0
UniRef50_A2DXK8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 32 6.6
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 83.8 bits (198), Expect = 2e-15
Identities = 38/51 (74%), Positives = 47/51 (92%), Gaps = 2/51 (3%)
Frame = +3
Query: 108 MADDTENVA--VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MAD+TE ++ ++ VKEPLDLIRLSLDE++YVKMRNERELRG+LHA+DQHL
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHL 51
Score = 56.8 bits (131), Expect = 2e-07
Identities = 29/51 (56%), Positives = 32/51 (62%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+MVLGDA +T KRTIPMLFVRGDGVILVSPP+RV
Sbjct: 52 NMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMRV 102
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 81.4 bits (192), Expect = 8e-15
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 50
Score = 51.6 bits (118), Expect = 8e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 51 NMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 64.9 bits (151), Expect = 8e-10
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +3
Query: 132 AVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
+ V EPLDL+RLSLDE +YVK+R +REL G+LHAYD+HL
Sbjct: 3 SAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHL 43
Score = 37.9 bits (84), Expect = 0.10
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPP 397
+MVLGDA +T ++ MLFVRGD VIL++PP
Sbjct: 44 NMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 62.5 bits (145), Expect = 4e-09
Identities = 32/50 (64%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MAD+ + TV++PLDL RLS +ERI VKMRN+RELRG+LH YDQHL
Sbjct: 1 MADNVDQQQTTNTVEDPLDL-RLSPEERICVKMRNDRELRGRLHTYDQHL 49
Score = 43.2 bits (97), Expect = 0.003
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD +TK+ IP+ F+RGDG+ LV+PP+RV
Sbjct: 50 NMILGDVEETVTTIEIDEETYEETYESTKQNIPVFFLRGDGIFLVAPPLRV 100
>UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein
NCU09512.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09512.1 - Neurospora crassa
Length = 168
Score = 59.3 bits (137), Expect = 4e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +3
Query: 108 MADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
MAD E+ +V EP+DL+RL LDE + VK+R +REL+G+LHAYD H
Sbjct: 1 MADAVEDAG--SVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSH 46
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 55.6 bits (128), Expect = 5e-07
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +3
Query: 150 EPLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
EPLDL+RL +DE + VK+R +REL+G+LHAYD H
Sbjct: 9 EPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSH 42
>UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1;
Babesia bovis|Rep: LSM domain containing protein -
Babesia bovis
Length = 89
Score = 55.2 bits (127), Expect = 6e-07
Identities = 21/35 (60%), Positives = 31/35 (88%)
Frame = +3
Query: 147 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
KEP+D+IR++LDER+Y+K + RE+ G+LHAYD+H
Sbjct: 3 KEPMDVIRVNLDERVYLKCKGGREIVGQLHAYDEH 37
>UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria
parva|Rep: Sm protein, putative - Theileria parva
Length = 84
Score = 54.8 bits (126), Expect = 8e-07
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = +3
Query: 138 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
+T++EPLD+IRL+LDE IY+K +N REL G+L A+D+H
Sbjct: 5 VTLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEH 42
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 52.0 bits (119), Expect = 6e-06
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = +3
Query: 135 VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
+ ++ PLD IRL+++E +++K + +RE+RGKL AYD HL
Sbjct: 4 IALIQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHL 43
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 50.8 bits (116), Expect = 1e-05
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = +3
Query: 144 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
++EPLDL++L+L ER+ +K+R +R + G LHAYD H+
Sbjct: 9 IQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHM 45
Score = 35.9 bits (79), Expect = 0.41
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 329 RTTKRTIPMLFVRGDGVILVSP 394
R +RT MLFVRGDGVIL+SP
Sbjct: 71 RIERRTAEMLFVRGDGVILLSP 92
>UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 85
Score = 50.0 bits (114), Expect = 2e-05
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +3
Query: 141 TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
T+ EPLD+++ S+ ++IY+KMRN EL+G L +YD HL
Sbjct: 3 TLDEPLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHL 40
Score = 32.3 bits (70), Expect = 5.0
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 335 TKRTIPMLFVRGDGVILVSP 394
TKR + L++RGDG+IL+SP
Sbjct: 58 TKRKLDALYLRGDGIILISP 77
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 50.0 bits (114), Expect = 2e-05
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +3
Query: 147 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
+EPLDL+R LDE + VK+R RE++GKL YD H
Sbjct: 11 QEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSH 45
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 48.4 bits (110), Expect = 7e-05
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 144 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
++ PLDL++L+LDER+Y+K+R R L G L A+D H
Sbjct: 1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSH 36
>UniRef50_Q2H770 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 117
Score = 47.2 bits (107), Expect = 2e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +3
Query: 144 VKEPLDLIRLSLDERIYVKMRNERELRGKLH 236
V EPLDL+RL LDE + VK+R +REL+G+LH
Sbjct: 11 VSEPLDLVRLLLDEVVCVKLRGDRELKGRLH 41
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 44.4 bits (100), Expect = 0.001
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +3
Query: 153 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQH 251
P D IRLS+++R+ VK++ +EL G LHAYD+H
Sbjct: 7 PQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEH 39
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 37.1 bits (82), Expect = 0.18
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +3
Query: 138 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
+ V+ PLD + SL+ + +K++ +RE RG L ++D H+
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHM 47
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 36.3 bits (80), Expect = 0.31
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 147 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
+ PLD+I SLD+ + V ++ E RGKL YD HL
Sbjct: 3 ERPLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHL 38
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 35.9 bits (79), Expect = 0.41
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 177 LDERIYVKMRNERELRGKLHAYDQHL 254
++E I++K + +REL GKL AYD HL
Sbjct: 1 MEEEIFLKCKGDRELIGKLDAYDNHL 26
>UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Rep:
SnRNP homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 69
Score = 35.1 bits (77), Expect = 0.71
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 153 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
PLD++ SL+E + V++++ E G L YDQH+
Sbjct: 14 PLDVLEESLEETVTVRLKDGDEFTGVLTGYDQHM 47
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 34.7 bits (76), Expect = 0.94
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 153 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
PLD++ SL + V+++ RE RG L YD H+
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHM 38
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 33.9 bits (74), Expect = 1.6
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 60 YFNKT*NKLFS*QYLEMADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHA 239
+F +T K FS M+D+T V+ PL++I S+ +R+ V M ++E GKL
Sbjct: 27 FFVETKKKPFSFLSTIMSDETVPQTVL----PLEVIDRSVGKRVRVLMTGDKEFNGKLIG 82
Query: 240 YDQHL 254
+D ++
Sbjct: 83 FDDYV 87
>UniRef50_Q5V3W7 Cluster: SnRNP-like protein; n=2;
Halobacteriaceae|Rep: SnRNP-like protein - Haloarcula
marismortui (Halobacterium marismortui)
Length = 60
Score = 33.1 bits (72), Expect = 2.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 153 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
PLD++ SL E + V+++ G+L YDQH+
Sbjct: 5 PLDVLEASLGETVTVQLKGGELFEGELTGYDQHM 38
>UniRef50_Q9NDI5 Cluster: Epiplasmin C; n=1; Tetrahymena
pyriformis|Rep: Epiplasmin C - Tetrahymena pyriformis
Length = 1164
Score = 32.3 bits (70), Expect = 5.0
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +3
Query: 147 KEPLDLIRLSLDE---RIYVKMRNERELRGKLHAYDQHLIWY*EMPKKL*QPLKSTKKHT 317
++ ++ +++ L+E + +K + ELRGKL YD +I Y ++ +KL + +++
Sbjct: 136 EQDINALKMKLEEFLRTLQLKSQECDELRGKLSQYDLLVIRYQQLEQKLQESEQNSLLLI 195
Query: 318 KKCTELQ 338
KK ELQ
Sbjct: 196 KKIEELQ 202
>UniRef50_Q179A8 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 417
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 96 QYLEMADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQ 248
Q LE+ D E + + + + DL++ + +R+ + ERELR H Y +
Sbjct: 94 QVLELGVDPEWILLKSAADSDDLLKFAQRKRLLLSFSTERELRNIHHVYSE 144
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 32.3 bits (70), Expect = 5.0
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 135 VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
+M + PLD + S++ + V +++ + ++G+L AYD H+
Sbjct: 1 MMDTQRPLDALGKSINTNVTVFLKDGKVVKGRLKAYDLHM 40
>UniRef50_A2DXK8 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 909
Score = 31.9 bits (69), Expect = 6.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 57 DYFNKT*NKLFS*QYLEMADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLH 236
D+ +K + S Y DDT + ++ + LD I L LD +K+R+E K+
Sbjct: 395 DFDDKLKPIIESTMYFNTFDDTCSCSISNLARSLDSIILKLDSETLMKLRDEPSFFSKVQ 454
Query: 237 AY 242
+Y
Sbjct: 455 SY 456
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 31.9 bits (69), Expect = 6.6
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 174 SLDERIYVKMRNERELRGKLHAYDQHL 254
S+ +++ VK+R+ E+RG L ++DQH+
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHV 45
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,214,776
Number of Sequences: 1657284
Number of extensions: 4745943
Number of successful extensions: 9606
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9606
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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