Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30966
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     76   1e-14
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068           27   7.1  
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611...    27   7.1  

>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 34/39 (87%), Positives = 38/39 (97%)
 Frame = +3

Query: 138 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           + VKEPLDLIRLSLDERIYVK+R++RELRGKLHAYDQHL
Sbjct: 14  IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHL 52



 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 27/52 (51%), Positives = 31/52 (59%)
 Frame = +2

Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRVS 409
           +M+LGD                   RTTKRTIP LFVRGDGVILVSPP+R +
Sbjct: 53  NMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104


>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
          Length = 67

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 183 ERIYVKMRNERELRGKLHAYDQHL 254
           + + V+++N+  +RG LH+ DQ+L
Sbjct: 13  KEVTVELKNDLAIRGTLHSVDQYL 36


>04_03_0807 -
           19860041-19860132,19860248-19860347,19861101-19861170,
           19861344-19861407,19862531-19862704,19862805-19862946,
           19863413-19863544,19863616-19863705,19864093-19864152,
           19864227-19864343,19864441-19864611,19866909-19866984,
           19867156-19867223
          Length = 451

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 352 YVICKRRWCHTCFTTST 402
           Y +  RR CHTC +TST
Sbjct: 394 YQVNGRRHCHTCLSTST 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,308,789
Number of Sequences: 37544
Number of extensions: 116407
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)