Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30966
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   85   3e-17
SB_22674| Best HMM Match : DUF590 (HMM E-Value=0.049)                  27   7.3  
SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023)          27   9.6  

>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 40/49 (81%), Positives = 44/49 (89%)
 Frame = +3

Query: 108 MADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           MA+  E VA  TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1   MAETGEEVAPNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 49


>SB_22674| Best HMM Match : DUF590 (HMM E-Value=0.049)
          Length = 243

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 195 HKFSHLS*ALSNPKVLLRS*QLH 127
           HKF+  +  L+NP+ L RS Q+H
Sbjct: 47  HKFTRATSVLTNPRALPRSSQIH 69


>SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023)
          Length = 393

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 270 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLV 410
           +P+K+ + L  +  H+  C E++N + L +L     S+L +H   LV
Sbjct: 144 LPRKISRILLGSVYHSTSCGEVENCMLLEHLQSNTESFLRNHPEGLV 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,274,434
Number of Sequences: 59808
Number of extensions: 160556
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)