Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30966
(454 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 81 1e-15
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 81 1e-15
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 81 1e-15
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 81 1e-15
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 81 1e-15
CR457133-1|CAG33414.1| 144|Homo sapiens TU3A protein. 29 9.8
BC010561-1|AAH10561.1| 144|Homo sapiens family with sequence si... 29 9.8
AK055443-1|BAB70924.1| 135|Homo sapiens protein ( Homo sapiens ... 29 9.8
AF089854-1|AAD16094.1| 144|Homo sapiens DRR1 protein. 29 9.8
AF089853-1|AAD16093.1| 144|Homo sapiens DRR1 protein. 29 9.8
AB023811-1|BAA82845.1| 144|Homo sapiens TU3A protein. 29 9.8
AB023810-1|BAA83072.1| 144|Homo sapiens TU3A protein. 29 9.8
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 50
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 51 NMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 50
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 51 NMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 50
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 51 NMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 50
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 51 NMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 81.4 bits (192), Expect = 1e-15
Identities = 39/50 (78%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
Frame = +3
Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHL
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHL 50
Score = 51.6 bits (118), Expect = 1e-06
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +2
Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 406
+M+LGD ++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 51 NMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>CR457133-1|CAG33414.1| 144|Homo sapiens TU3A protein.
Length = 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
>BC010561-1|AAH10561.1| 144|Homo sapiens family with sequence
similarity 107, member A protein.
Length = 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
>AK055443-1|BAB70924.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ30881 fis, clone FEBRA2004818, highly similar to
DRR1 PROTEIN. ).
Length = 135
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
>AF089854-1|AAD16094.1| 144|Homo sapiens DRR1 protein.
Length = 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
>AF089853-1|AAD16093.1| 144|Homo sapiens DRR1 protein.
Length = 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
>AB023811-1|BAA82845.1| 144|Homo sapiens TU3A protein.
Length = 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
>AB023810-1|BAA83072.1| 144|Homo sapiens TU3A protein.
Length = 144
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 IYVKMRNERELRGKLHAYDQHLIWY*EM--PKKL*QPLKSTKKHTKKCTEL 335
+Y +++ ER G L A ++ W E+ PKKL P+K+++ H + EL
Sbjct: 1 MYSEIQRERADIGGLMARPEYREWNPELIKPKKLLNPVKASRSHQELHREL 51
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,725,687
Number of Sequences: 237096
Number of extensions: 710343
Number of successful extensions: 1096
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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