Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30966
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    73   7e-14
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 34/50 (68%), Positives = 43/50 (86%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           MA + + V +  TV+EPLDL+RLSLDER+YVKMRN+RELRG+L A+DQHL
Sbjct: 1   MATEKKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHL 50



 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +2

Query: 329 RTTKRTIPMLFVRGDGVILVSPPVRVS 409
           + TKR +PMLFVRGD VILVSPP+R S
Sbjct: 76  KQTKRVVPMLFVRGDSVILVSPPIRAS 102


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 153 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           PL+LI   +  +I+V M+N++E+ G L  +D ++
Sbjct: 14  PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYV 47


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +3

Query: 156 LDLIRLSLDERIYVKMRNERELRGK-LHAYDQHLIWY*EMPKKL*QPLKSTKKHTKKC-- 326
           LD +R+  DE    K + E  L+ + L  +D+HL  + E   K   PLKS  K  ++   
Sbjct: 538 LDSVRIRKDE----KGQTENWLKPESLKRFDEHLKCWAEKYDKSADPLKSESKGIRQIEG 593

Query: 327 TELQNELFLCYL*EE 371
             +QNE+F  ++  E
Sbjct: 594 RYIQNEMFADFIGHE 608


>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +3

Query: 117 DTENVAVMTVKEPLDLIR--------LSLDERIYVKMRNERELRGKLHAYDQHL 254
           + E + +M+  E  DLI+        LSL E I  K  N +EL  +L  YD HL
Sbjct: 491 ENERLNIMSTAESEDLIKDKNCMPITLSLSEIIKGKKVNWKELSNELLLYDPHL 544


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 102 LEMADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNER 215
           LE+  D EN   +++KE    +  +   +I VK++N+R
Sbjct: 505 LEVVSDPENAEFLSIKEARKTVEDASGCKIAVKIKNKR 542


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,911,872
Number of Sequences: 27780
Number of extensions: 123699
Number of successful extensions: 256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)