Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30966
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati...    75   2e-14
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati...    73   1e-13
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta...    27   4.5  
At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH...    27   5.9  

>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
           LSm3 (MDS017) [Mouse]
          Length = 98

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 33/38 (86%), Positives = 38/38 (100%)
 Frame = +3

Query: 141 TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           TV+EPLDLIRLSLDERIYVK+R++RELRGKLHA+DQHL
Sbjct: 8   TVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHL 45



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 26/52 (50%), Positives = 30/52 (57%)
 Frame = +2

Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRVS 409
           +M+LGD                   RTTKRTI  LFVRGDGVILVSPP+R +
Sbjct: 46  NMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97


>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
           / snRNP, putative / Sm protein, putative similar to
           SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
           LSm3 (MDS017) [Mouse]
          Length = 97

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 31/38 (81%), Positives = 38/38 (100%)
 Frame = +3

Query: 141 TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHL 254
           TV+EPLDLIRLS++ERIYVK+R++RELRGKLHA+DQHL
Sbjct: 8   TVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHL 45



 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 26/52 (50%), Positives = 31/52 (59%)
 Frame = +2

Query: 254 DMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRVS 409
           +M+LGD                   RTTKRT+P LFVRGDGVILVSPP+R +
Sbjct: 46  NMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 97


>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
           putative / snRNP core SM-like protein, putative / U6
           snRNA-associated Sm-like protein, putative similar to
           SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
           LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
           SnRNP core SM-like protein SM-x5) [Homo sapiens]
          Length = 93

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 183 ERIYVKMRNERELRGKLHAYDQHL 254
           + + V+++N+  +RG LH+ DQ+L
Sbjct: 13  QEVTVELKNDLAIRGTLHSVDQYL 36


>At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 847

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -2

Query: 156 KVLLRS*QLHF-QYRLPFLDIVMKIACFM 73
           K++++S  L+F QYRLP L+IV+ +  F+
Sbjct: 79  KLIIKSAGLYFWQYRLPKLEIVILLVFFL 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,138,241
Number of Sequences: 28952
Number of extensions: 105268
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)