Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30965
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.50 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.5  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 509 LIAICWSVIPRRRPCIFFTKLGCIL 435
           ++ +C+S++    PC+FF  LG IL
Sbjct: 221 IVFVCFSLVEDTLPCVFF--LGSIL 243


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 515 SGNGDNTFEHNQYEQLRDFLPHNQGAAHSDGGNS 616
           +G+G NT  HN Y Q  ++ P   G    D  NS
Sbjct: 289 NGHGHNTSSHNYYAQ--NYAPTYYGQMQPDYLNS 320



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 378 QSYRPTSNI 404
           QSYRPT NI
Sbjct: 246 QSYRPTGNI 254


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 219 HWIRHPFLYFHWIRHWNFNSNCLCN 145
           H I+   L + +  H N+NSN L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 219 HWIRHPFLYFHWIRHWNFNSNCLCN 145
           H I+   L + +  H N+NSN L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 219 HWIRHPFLYFHWIRHWNFNSNCLCN 145
           H I+   L + +  H N+NSN L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 219 HWIRHPFLYFHWIRHWNFNSNCLCN 145
           H I+   L + +  H N+NSN L N
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSN 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,565
Number of Sequences: 336
Number of extensions: 4816
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)