Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30965
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    30   0.41 
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    28   1.3  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   2.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   2.9  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   3.9  
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    27   3.9  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   3.9  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   6.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   8.9  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 285 GNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSN 401
           GNG++   +  D    +  +V+E +E  DGG S   T+N
Sbjct: 212 GNGYHDSSSMSDSRDASDNDVEEYNEDGDGGSSDAATAN 250


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 29/113 (25%), Positives = 46/113 (40%)
 Frame = +3

Query: 168 NSSALSSENKGKGALSSARR*TIPRSCTAIIKVPHIVTPGNGHNSHEASEDGVQNNSYNV 347
           N  A S  +  K + S     +  RS ++ +      +  +G NS   S+D    N  ++
Sbjct: 90  NDGAKSDRSSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEEDGNFASI 149

Query: 348 QENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPTYSN 506
            E HE ++   +   +SN  S +GS S S      S   + T S   A T  N
Sbjct: 150 PELHEDNEYHSNLATSSNPFS-DGSSSKSASLTASSAAASPTVSFSPASTSEN 201


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 243 SCTAIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENH 359
           SC A+  V +IV   NGH     SEDG     Y+++E H
Sbjct: 140 SC-ALDSVKNIVPCDNGHTFLVCSEDGTA-RQYDIREPH 176


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 327 QNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS-YSQDAAQFSE 458
           + N+ N   NH  +DG + YRP  +      +PS Y +   Q S+
Sbjct: 455 ETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQ 499


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 288 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAA 446
           NG++S+++ +D  +NN    + N  P       RP S++     SP + QDAA
Sbjct: 33  NGNSSYDSIKDSSKNNKDVAEVNEYPR------RPESSVSVVSNSP-HRQDAA 78


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 423 PSYSQDAAQFSEEYAGTPSGYNAPT 497
           P+   +A  F E  AG P G+NAP+
Sbjct: 366 PTMPSEAKGFIESGAGQPLGFNAPS 390


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 66  CGRL*DRTTRSWTTC*NTRNACEGDQ 143
           CG L + TT  WTTC   ++    +Q
Sbjct: 13  CGNLLESTTAQWTTCDQCQSVYPSEQ 38


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 276 VTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFS 455
           V  G+   S    +    +N Y+   N   S GG++   +++  S+   PS + D A + 
Sbjct: 95  VRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSGGSYTTDPSRTDDTASYG 154

Query: 456 E 458
           +
Sbjct: 155 Q 155


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 183 IRHWNFNSNCLCNFDHLHRR 124
           +  W+FN   L N  H+HR+
Sbjct: 449 LSEWDFNRALLLNLQHMHRK 468


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 589 ALIVRKKVSQLLVLVMFKSIITVSRIT*LLYVGALY 482
           AL+V  K+  + V   FKSII     T +  VGAL+
Sbjct: 124 ALLVAAKILNVQVPFYFKSIIDTMNTTLVQEVGALW 159


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +3

Query: 297 NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP 476
           N  E   D  ++ S   ++  +     +SY  +S   S+  +P+ S +     E+Y    
Sbjct: 123 NDKELDTDNNEDESTTFKDEEDDLISPKSYLTSSKTFSYPKAPTESTNGDYLDEDYV--- 179

Query: 477 SGYNAPTYSN 506
            G + P  SN
Sbjct: 180 DGQSDPESSN 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,026
Number of Sequences: 5004
Number of extensions: 74839
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)