Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30965
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    32   0.57 
06_03_0830 + 25159758-25162460                                         32   0.57 
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    31   1.3  
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459...    29   3.1  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   3.1  
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    28   7.1  
05_01_0377 + 2947508-2947663,2947743-2947949                           28   7.1  

>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +3

Query: 366  SDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPTYS 503
            S    +Y PTS  +S   SPSYSQ +  +S     T SG  +P YS
Sbjct: 1770 SQTSPNYSPTSPTYS-PTSPSYSQPSPSYSPTSPYTTSGGPSPDYS 1814



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 381  SYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPTYS 503
            SY PTS  +S   SPSY+  +A++S  +A +PS      YS
Sbjct: 1731 SYSPTSPNYS-PTSPSYNPSSAKYSPSHAYSPSSPRLSPYS 1770


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 375 GQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPTYSN 506
           GQ      N H+F G    S+D A+  + Y  TP  Y+  +YS+
Sbjct: 725 GQKEHSHQNEHNFLGPSVESRDPARSMQSYGHTPPDYSVVSYSS 768


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 276  VTPGNGHNSHEASEDGVQNNSYNVQ-ENHEPSDGGQSY--RPTSNIHSFEGSPSYSQDAA 446
            V P +G+N H+       NN+Y++Q   H P      Y   P  N   +  +PSY +   
Sbjct: 1185 VPPHHGNNYHQPPSVPPPNNAYHLQPPPHPPFPNQYPYPPEPQQNTQPWNCNPSYPE--- 1241

Query: 447  QFSEEYAGTPS 479
                +Y G PS
Sbjct: 1242 --RHQYEGIPS 1250


>12_02_0661 +
           21644328-21644517,21644697-21644875,21644899-21645922,
           21647108-21647262
          Length = 515

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 399 NIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPTYSN*VILETVIILLNITNTS 557
           N H+FE  PSY+Q + Q      GTP   +    S+ + LE + ++L I+N +
Sbjct: 454 NNHAFE--PSYAQPSHQPVAYTPGTPFDNSINALSHTLELEHIYLILTISNVA 504


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +3

Query: 357  HEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYN-----APTYS 503
            + P+  G  Y PTS  +S   SPSY+  + +++  +A +PS  N     +PTYS
Sbjct: 1787 YSPTSPG--YSPTSPSYS-PSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYS 1837


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 312 SEDGVQNNSYNVQENHEPSDGG-QSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGY- 485
           S +G   NSYN  E  E S GG ++ R TS         S +   AQ S   A   +G+ 
Sbjct: 117 SVNGGFMNSYNASERRESSKGGKETNRRTSVPSQAPAKSSSATHKAQASSHGAKKANGHA 176

Query: 486 -NAP 494
            NAP
Sbjct: 177 PNAP 180


>05_01_0377 + 2947508-2947663,2947743-2947949
          Length = 120

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 212 IQCTSLNHTPFLYRNY*SSTYCNT-GEW 292
           ++C +L HTP+ YR +   + C   G+W
Sbjct: 45  VKCPNLEHTPYAYRFFVGRSVCAIFGQW 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,154,077
Number of Sequences: 37544
Number of extensions: 482096
Number of successful extensions: 1246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)