Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30965
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 32 0.58
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 32 0.58
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 31 1.0
SB_38931| Best HMM Match : TP2 (HMM E-Value=6.7) 31 1.4
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 31 1.4
SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003) 29 3.1
SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031) 29 5.5
SB_6268| Best HMM Match : Extensin_1 (HMM E-Value=0.098) 29 5.5
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_49799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_48352| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_31896| Best HMM Match : TPR_1 (HMM E-Value=0.39) 28 7.2
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015) 28 7.2
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 9.5
SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41) 28 9.5
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19) 28 9.5
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 33.9 bits (74), Expect = 0.14
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Frame = +3
Query: 114 NTRNACEGDQNYKDNCC*NSSALSSENKGKGALSSARR*TIPRSCTAIIK----VPHIVT 281
+T +A E Q D+ C S SE K K S+A+ + T IIK H+ +
Sbjct: 1404 DTNSALEITQAVPDSVCGKSFEGKSEIKEKVEESNAKVTSSQVMDTNIIKGTSPAGHLES 1463
Query: 282 --PGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFS 455
PGN ++S ED + S + QEN E + + R T+ E S + +
Sbjct: 1464 KLPGNANSSASLDEDQLPAGSVSDQENREGTTEQDASRETTPRQRGESEVSLVSKTSSLT 1523
Query: 456 EE 461
EE
Sbjct: 1524 EE 1525
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 178 PYPVKIKERVPYPVHVAKPYPVPVP 252
P PV + RVP P+H P P+P P
Sbjct: 1093 PVPVPVPVRVPVPMHQQSPLPMPRP 1117
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 178 PYPVKIKERVPYPVHVAKPYPVPVP 252
P+PV++ RVP+ V V P PV VP
Sbjct: 214 PFPVRVPVRVPFRVPVRVPVPVRVP 238
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 31.1 bits (67), Expect = 1.0
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +3
Query: 192 NKGKGALSSARR*TIPRSCTAIIKVPHI--VTPGNGHNSHEASEDGVQNNSYNVQENHEP 365
+ G+ A S R P+ +A++ V P + S +S +N+Y Q +
Sbjct: 52 SNGEQAKPSKLRLNAPKPQSALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQV 111
Query: 366 SDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 497
G + PTSN + + S S A + SE + P S APT
Sbjct: 112 KSGSSIHAPTSNKDRIK-AVSSSAMAPKTSERFTTKPGSSIGAPT 155
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +3
Query: 192 NKGKGALSSARR*TIPRSCTAIIKVPHI--VTPGNGHNSHEASEDGVQNNSYNVQENHEP 365
+ G+ A S R P+ +A++ V P + S S +N+Y Q +
Sbjct: 1446 SNGEQAKPSKLRLDAPKPQSALVTSTKTKAVEPQSVMASKPCSASASPSNTYRTQNTDQV 1505
Query: 366 SDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 497
G + PTSN + + S S A + SE + P S +APT
Sbjct: 1506 KSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPGSSIDAPT 1549
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 330 NNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 497
+N+Y Q + G + PTSN + + S S A + SE + P S +APT
Sbjct: 674 SNTYRTQNTDQVKSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPGSSIDAPT 729
>SB_38931| Best HMM Match : TP2 (HMM E-Value=6.7)
Length = 251
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 294 HNSHEASE--DGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQ-DAAQFSEEY 464
H+S +E + SY E+ SDGG+SY T+ H + SP S D + S EY
Sbjct: 114 HSSEGKAEYRSAMNTLSYQRTESIAASDGGKSYSETAPYHYEQLSPPSSHPDDYKDSREY 173
Query: 465 A 467
A
Sbjct: 174 A 174
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +3
Query: 192 NKGKGALSSARR*TIPRSCTAIIKVPHI--VTPGNGHNSHEASEDGVQNNSYNVQENHEP 365
+ G+ A S R P+ +A++ V P + S S +N+Y Q +
Sbjct: 317 SNGEQAKPSKLRLDAPKPQSALVTSTKTKAVEPQSVMASKPCSASASPSNTYRTQNTDQV 376
Query: 366 SDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 497
G + PTSN + + S S A + SE + P S +APT
Sbjct: 377 KSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPGSSIDAPT 420
>SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003)
Length = 109
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 282 PGNGHNSHEASEDGVQNNSYNVQENHEPSDG 374
PGN S E DG++N + N E SDG
Sbjct: 4 PGNKPESAEEQSDGMRNPGNQPESNEEQSDG 34
>SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 285 GNGHNSHEASEDGVQNNSYNVQENHEPSD 371
G NSH +DG+ +NS+ +++ PSD
Sbjct: 60 GMSSNSHATRDDGMSSNSHATRDDGMPSD 88
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 285 GNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRP--TSNIHSFEGSPSYSQDAA 446
G NSH +DG+ +NS+ +++ SD + +SN+H+ G S A
Sbjct: 532 GMSSNSHATRDDGMPSNSHATRDDGMSSDSHATRGDGMSSNLHATRGDGMSSNSHA 587
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +3
Query: 285 GNGHNSHEASEDGVQNNSYNVQENHEPSDG------GQSYRPTSNIHSF--EGSPSYS-- 434
G NSH DG+ +NS+ +++ PSD G SN H+ +G PS S
Sbjct: 420 GMSSNSHATRVDGMPSNSHATRDDGMPSDSHATRDDGMDDGMPSNSHATRDDGMPSNSHT 479
Query: 435 -QDAAQFSEEYAGTPSGYNAPTYS 503
+D S +A G ++ +++
Sbjct: 480 TRDDGMSSNSHATRDDGMSSNSHA 503
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 237 VWFSDVHWIRHPFLYFHWIRHWNFNSNCLCNFDHLHRRFWYFNM 106
+W V + H +H I W F+ + LC+ ++++ W F++
Sbjct: 103 IWLFHVSLLCHVIYMYHVI--WLFHVSLLCHVNYMYHVIWLFHV 144
>SB_54638| Best HMM Match : Cache (HMM E-Value=0.0031)
Length = 598
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 390 AYTTAHHQMVHDFLEHYRNYFVHHLPMLHDCYVHSPVL 277
A T H +VHD L H VH P++H+ VH P++
Sbjct: 478 AVTVLHDPLVHDPLVH--EPLVHE-PLVHEPLVHEPLV 512
>SB_6268| Best HMM Match : Extensin_1 (HMM E-Value=0.098)
Length = 162
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 390 AYTTAHHQMVHDFLEHYRNYFVHHLPMLHDCYVHSPVL 277
A T H +VHD L H VH P++H+ VH P++
Sbjct: 54 AVTVLHDPLVHDPLVH--EPLVHE-PLVHEPLVHEPLV 88
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 28.7 bits (61), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 270 HIVTPGNGHNSHEASEDGVQNNSYNVQENH 359
H++T GN H + G++NNS+ + ++
Sbjct: 1620 HVLTRGNSHEITRDNSHGIRNNSHGITRDN 1649
>SB_49799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 303 HEASEDG--VQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQ 437
HE + G ++ ++ N+ + +PS G+ T+NI + G+ SYS+
Sbjct: 105 HEIGDQGQVIERSAINIIIHEDPSCAGKFVNVTTNITNSTGNWSYSK 151
>SB_48352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 423 PSYSQDAAQFSEEYAGTPSGYNAP 494
P S A+ +S AGTPSGY P
Sbjct: 16 PDPSSSASYWSRSPAGTPSGYTGP 39
>SB_31896| Best HMM Match : TPR_1 (HMM E-Value=0.39)
Length = 268
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = -3
Query: 596 ARRLDCEEESLSVARIGYV 540
AR LD E+E+++++R+GYV
Sbjct: 83 ARELDLEQEAIALSRLGYV 101
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 285 GNGHNSHEASEDGVQNNSYN---VQENHEPSDGGQSYRPTSNIHSFEG 419
GN H SH ED + N + Q+ + S +YR N+H +G
Sbjct: 466 GNVHRSHGKYEDAMNNYQHAHSLFQKTGDESGQADAYRGMGNVHWSQG 513
>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
Length = 504
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 288 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNI 404
N +N++ +S + NN+YN N+ ++ +Y+ N+
Sbjct: 453 NTYNNNNSSNNNNNNNTYNNNNNNTYNNNNNNYKQQRNL 491
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 635 ENTNGNNYFHRPNARRLDCEEESLSVARIGY 543
EN N N FH PN +D +E +++IG+
Sbjct: 1535 ENANVENSFHDPNRPFIDIQEIRRIMSKIGW 1565
>SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41)
Length = 225
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/80 (23%), Positives = 31/80 (38%)
Frame = +3
Query: 237 PRSCTAIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFE 416
P+S V P + S +S +N+Y Q + G + PTSN +
Sbjct: 26 PQSALVTSTKTKAVEPQSVMASKPSSASASPSNTYRTQNTDQVKSGSSIHAPTSNEDIIK 85
Query: 417 GSPSYSQDAAQFSEEYAGTP 476
S S + + +E +A P
Sbjct: 86 AMSS-SATSPKTTERFASKP 104
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 294 HNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQ 437
H +H E Q+ + Q + ++ +S + ++ SFEG PSY +
Sbjct: 732 HQAHPRVERAYQSLVFLFQYYSDGTEVSESDKENQDVASFEGLPSYER 779
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 330 NNSYNVQENHEPSDGGQSYRPT-SNIHSFEGSPSYSQDAAQFSEEY 464
NN YN + N+E ++ Y +N ++ E + Y+ + +++ EY
Sbjct: 250 NNEYNTEYNNEYNEYNNDYNTEYNNEYNTEYNTEYNTEYTEYNTEY 295
>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1026
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 330 NNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP-SGYNAPT 497
+N+Y Q + G + PTSN + + S S A + SE + P S +APT
Sbjct: 671 SNTYRTQNTDQVKSGSSIHAPTSNEDRIK-AVSSSAMAPKTSERFTTKPGSSIDAPT 726
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,532,107
Number of Sequences: 59808
Number of extensions: 560357
Number of successful extensions: 1567
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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