Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30965
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 33 0.29
Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical pr... 31 1.2
U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 30 2.1
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 29 2.7
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 29 2.7
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 29 2.7
Z19153-4|CAA79548.1| 525|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 28 8.3
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 28 8.3
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 28 8.3
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 28 8.3
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 282 PGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGS-PSYSQDAAQFSE 458
P NG + + S +NS N Q NH+ + +S P SN ++F + Y ++ + FS
Sbjct: 127 PSNGKRNEQNSSFKQDHNSKNHQSNHQKTKNKKS-NPYSNQNNFNNTRKDYREEKSGFSW 185
Query: 459 EYAGTPSGYNAPTYSN 506
G+ Y Y N
Sbjct: 186 N-TGSADDYEDFVYRN 200
>Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical
protein F55H12.1 protein.
Length = 768
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 419 AFKGVNXXXXXXXXXXXRWFMIFLNIIGIILYTIFRCFMTVMSIPRCYNMWNFNNCGTGT 240
A +GV ++MI ++ I + + IF V ++ RC N WN NNC G+
Sbjct: 186 ALEGVGWMTCIVGAVIGVYYMILISWIVLYIINIFY----VNNMGRCDNPWNQNNCYDGS 241
>U46675-2|AAB52644.1| 125|Caenorhabditis elegans Hypothetical
protein F35A5.5 protein.
Length = 125
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 178 PYPVKIKERVPYPVHVAKPYPVPVP 252
P P+ I VP P V +P PVP+P
Sbjct: 4 PIPIPIPAPVPVPAPVPQPVPVPMP 28
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 178 PYPVKIKERVPYPVHVAKPYPVPVP 252
P PV + VP PV V P P+P+P
Sbjct: 10 PAPVPVPAPVPQPVPVPMPMPMPMP 34
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 178 PYPVKIKERVPYPVHVAKPYPVPVP 252
P PV + +P P+ + P PVPVP
Sbjct: 20 PQPVPVPMPMPMPMPMPMPVPVPVP 44
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/90 (25%), Positives = 34/90 (37%)
Frame = +3
Query: 231 TIPRSCTAIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHS 410
T PRS P T + HE + D V+ + + + +P + +
Sbjct: 582 TPPRSLIPAHNFPPPSTFPPDEDYHETTTDTVRPTAQTISTRFTAPTTTTTSKPVESTTT 641
Query: 411 FEGSPSYSQDAAQFSEEYAGTPSGYNAPTY 500
E +P + A A TPSG N PTY
Sbjct: 642 EEDTPEHVPPAIVHMT--ASTPSGKNPPTY 669
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 365 WFMIFLNIIGI-ILYTIFRCFMTVMSIPRCYNMWNFNNCGTGT 240
+F +F NII L+ + F + C N W+ NC GT
Sbjct: 155 FFAVFFNIISAWTLFYLINSFSFSIPWSNCANSWSGENCTLGT 197
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -3
Query: 365 WFMIFLNIIGI-ILYTIFRCFMTVMSIPRCYNMWNFNNCGTGT 240
+F +F NII L+ + F + C N W+ NC GT
Sbjct: 155 FFAVFFNIISAWTLFYLINSFSFSIPWSNCANSWSGENCTLGT 197
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 184 PVKIKERVPYPVHVAKPYPVPVP 252
PV + +VP P+ V P PVP P
Sbjct: 157 PVPVPVQVPVPIRVPVPVPVPTP 179
>Z19153-4|CAA79548.1| 525|Caenorhabditis elegans Hypothetical
protein C38C10.4 protein.
Length = 525
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 506 IAICWSVIPRRRPCIFFTKLGCILTITGAAFK 411
IA C + +RR +F LG +LTI ++FK
Sbjct: 312 IAKCLIALGKRRQAAYFIILGSVLTINQSSFK 343
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 190 KIKERVPYPVHVAKPYPVPVPQLLKFHI 273
K+KE P P +P PVPVP +K I
Sbjct: 770 KVKEPEPEPEEYEQPTPVPVPVPVKMVI 797
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 190 KIKERVPYPVHVAKPYPVPVPQLLKFHI 273
K+KE P P +P PVPVP +K I
Sbjct: 768 KVKEPEPEPEEYEQPTPVPVPVPVKMVI 795
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 190 KIKERVPYPVHVAKPYPVPVPQLLKFHI 273
K+KE P P +P PVPVP +K I
Sbjct: 770 KVKEPEPEPEEYEQPTPVPVPVPVKMVI 797
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 190 KIKERVPYPVHVAKPYPVPVPQLLKFHI 273
K+KE P P +P PVPVP +K I
Sbjct: 768 KVKEPEPEPEEYEQPTPVPVPVPVKMVI 795
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +3
Query: 282 PGNGHNSHE----ASEDGVQNNSY--NVQENHEPSDGGQSYRPTSNIHSFEGSPSY 431
P H+S+E + D N Y + Q +H+P GG Y + + GS +Y
Sbjct: 59 PSYYHDSYEPKYNSGHDQKSGNDYYSSYQPSHQPYYGGSYYNEQPKYNDYHGSQNY 114
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 318 DGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT 497
D Q +Y+ P++ +Y T+ S+E +PSY + + Q S++Y P+ P+
Sbjct: 254 DYAQKPAYSTAPPTYPTEA-PTYPTTA---SYETTPSYPEPSYQVSKKYPIAPTYETTPS 309
Query: 498 Y 500
Y
Sbjct: 310 Y 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,810
Number of Sequences: 27780
Number of extensions: 431346
Number of successful extensions: 1438
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -