Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30965
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    27   0.19 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.1  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 365 WFMIFLNIIGIILYTIFRCFMTVMS-IP--RCYNMWNFNNC 252
           W  ++   I I+ + IF  FM++ S +P   C N WN  NC
Sbjct: 72  WMNVYY--IVILAWAIFYFFMSMRSELPWGSCNNYWNTKNC 110


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 43   SHHSHTIPVEGYETELQDLGQHVE 114
            +H   T+P +    E  DL QHVE
Sbjct: 1261 NHGKRTLPAKNTYFEATDLQQHVE 1284


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 43   SHHSHTIPVEGYETELQDLGQHVE 114
            +H   T+P +    E  DL QHVE
Sbjct: 1257 NHGKRTLPAKNTYFEATDLQQHVE 1280


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 665 NKTWY*NLKQENTNGNNYFHRPN 597
           NKT + N    N N NNY +  N
Sbjct: 87  NKTIHNNNNYNNNNYNNYNYNNN 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,139
Number of Sequences: 438
Number of extensions: 6090
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)